Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g740 ATGTCTTCTGTGATTCCTGGGTGGTTTTCGGAGATTAGCCCAATGTGGCCTGGAGAGGCACATTCCTTAAAGGTAGAAAAGATCTTATTTCAGGAGAAATCTGACTACCAGAATGTAATGGTCTTTCAGTCAGCAACATATGGAAAGGTTCTCGTTTTGGATGGGGTGATTCAACTCACAGAGAGGGATGAATGCGCATATCAAGAAATGATCACTCACCTGCCACTTTGCTCAATTCCAAACCCAAAGAAGGTTTTGGTCATTGGCGGAGGAGATGGTGGTGTCCTGCGAGAAGTGGCCCGACATTCTTCTGTTGAGCAGATAGATATCTGTGAAATTGATGGGATGGTTGTCGATGTTTCTAAAAAATTTTTCCCTGACGTAGCAATTGGGTATGATGATCCCCGTGTGAATCTCCATATTGGCGATGGGGTTGCATTTATGAAGAATGCACCTGAAGGAACTTATGATGCTGTTATAGTAGATTCTTCTGACCCAATAGGTCCTGCACAGGAGCTTTTTGAGAAGCCTTTCTTTGCGTCAGTGGCAAGGGCTCTTCGTCCAGGGGGAGTTGTGTGTACTCAGGCAGAAAGTATATGGCTTCATATGCACATTATTGAAGACATTGTCACAAACTGCCGCCAGATATTCAAAGGCTCTGTCAACTATGCATGGACAACAGTTCCTACATACCCAAGTGGGGTGATTGGATTCATGCTGTGCTCTACTGAGGGACCTGCTGTTGATTTCAAGCATCCTGTCAATCCCATTGATGCAAATGAGAGTGCTTGCAAGTCAAGTCGACCTTTGAAATTTTACAACTCAGAGATTCACGCTGCAGCTTTCTGTTTGCCATCTTTTGCAAAGAAGGTGATTGATTCAAAAACTACATGA 894 43.96 MSSVIPGWFSEISPMWPGEAHSLKVEKILFQEKSDYQNVMVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVEQIDICEIDGMVVDVSKKFFPDVAIGYDDPRVNLHIGDGVAFMKNAPEGTYDAVIVDSSDPIGPAQELFEKPFFASVARALRPGGVVCTQAESIWLHMHIIEDIVTNCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPAVDFKHPVNPIDANESACKSSRPLKFYNSEIHAAAFCLPSFAKKVIDSKTT* 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8886791 8891553 + Vvi1g740 Vvi1g740 769940

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g740 297 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 4 293 IPR029063 -
Vvi1g740 297 TIGRFAM speE: spermidine synthase 8 287 IPR001045 GO:0003824
Vvi1g740 297 Gene3D Vaccinia Virus protein VP39 59 297 IPR029063 -
Vvi1g740 297 PIRSF Spermidine_synth 1 297 IPR030668 GO:0006595
Vvi1g740 297 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 6 243 IPR030374 -
Vvi1g740 297 Pfam Spermine/spermidine synthase domain 64 251 - -
Vvi1g740 297 Gene3D Spermidine synthase, tetramerisation domain 1 58 IPR037163 -
Vvi1g740 297 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 85 98 IPR030373 -
Vvi1g740 297 PANTHER SPERMIDINE SYNTHASE-RELATED 1 296 - -
Vvi1g740 297 Pfam Spermidine synthase tetramerisation domain 7 61 IPR035246 -
Vvi1g740 297 CDD AdoMet_MTases 84 195 - -
Vvi1g740 297 Hamap Polyamine aminopropyltransferase [speE]. 7 293 IPR001045 GO:0003824
Vvi1g740 297 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 296 IPR001045 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g740 K00797 speE, SRM, SPE3; spermidine synthase [EC:2.5.1.16] - vvi:100257112 598.971
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g740 Vvi17g719 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g740 Blo01g00399 . Bda01g02226 . Bpe13g00491 Bpe10g00833 Bma14g01785 Bma15g00191 . Cmo18g00810 . Cma18g00807 . Car18g00739 . Cpe09g00497 Cpe01g01521 . . . . . . . Cla05g02529 Cam05g2719 Cec05g2750 Cco05g2791 Clacu05g2721 Cmu05g2575 Cre05g2689 Cone13ag1032 Cone19ag1023 Cone8ag0653 . Lsi04g00535 Csa05g02348 Chy10g00915 Cme10g00511 Blo06g00871 Blo11g00905 Bda07g01594 . . . Bma01g00055 . . . . Cma04g01719 . Car04g01751 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000582 4 4 3 5 5 3 5 3 3 3 3 3 4 3 3 5 3 3 4 3 3 6 2 4 4 3 3 4 3 2 106