Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g745 ATGGCCTCAAGATCATGTGCAAATTTTTTGGACTTGGCTTCTGGAAGCCTGCTGGATATCCCTCATACTCCTAGACCTCTTCCACGGGTGATGACTCGGAAAATTATAGTGGCAAATATGCTGCCTTTGCATGCTCAAAGGGATAAAGTGACTGCCAAATGGTGCTTTAGTTTAGATGAAGATGCTCTTCTATTGCATTTAAAGGATGGTTTCTCCCCTGAAACAGAGGTTATTTATGTGGGGTCTCTCAAGGTTGAAATAGATGCAAGTGAACAGGAAGAAGTTGCACAGAAACTGCTGGAGGATTTCAATTGTGTACCAACATTTTTACCTCATGACCTGCATAAAAAGTTTTATCATGGGTTCTGTAAACAGCAACTGTGGCCTCTTTTTCATTACATGTTGCCCATGAAGCGCTTCCATCGTGTCAAGCTTGGGTTCTTCCTGCACAGTCCATTCCCCTCATCAGAAATATACAGAACCCTACCAGTTAGAGATGAAATTCTCCGAGGATTGCTGAATTGTGATCTAATTGGCTTTCAGACATTTGATTATGCTCGCCACTTCCTGTCCTGCTGCAGTAGAATGCTGGGTCTGGACTACGAATCTAAGCGGGGACACATTGGACTTGATTACTCGGGTCGGACTGTGTATATCAAAATTCTGCCTGTTGGGGTTCATATGGGTAGACTTGAATCTGTACTGAATCTTCACTCTACATCTGCCAAAATCAAAGAAATTCAAAAACAGTTTGAAGGGAAAAAATTGATTCTTGGTGTGGATGACATGGATATATTTAAAGGTATTAGTCTGAAATTTCTTGCTGTAGAACAGCTCTTACAACAGCACCCAGAGTTGCAAGGAAAACTAGTACTGGTTCAAATTGTGAATCCGGCAAGGAGCACAGGGAAAGATGTCCAGGAAGCAAAAAGAGAGACATATTTAACTGCTGAAAGGATCAATGAAACTTATGGTTCCCCAAATTATGAGCCGGTGATTCTCATTGATCGTCCTGTTGCTCGCTATGAGAAGTCTGCCTATTATGCTGTGGCAGAATGTTGCATAGTGAATGCTGTAAGGGATGGAATGAACTTAGTTCCTTACAAGTATATTGTCTGCAGGCAGGGAACTCCACATATGGATAAAGAAACAGGCATGAACTTGCAATTAGGCAAACGGTGTTGGGGAATTGTTATATCTGTTCTGAGTACTTTATGCAGTGATCCTAAGAACACTGTATTTATTGTTAGTGGCAGGGGAAGGAGTTCACTGAGTGAGTGGCTTGCCCCATGTGAAAGGTTGGGAATAGCAGCTGAGCATGGGTACTTTATGAGGTGGAATGAGTCCACCAAGTGGGAAAGTTGTAACTTGGCTGCCGACCTTGACTGGAAAAAAGTTGTGGAGCCTGTGATGAGATTATATACTGAGACGACTGATGGCTCCAACATAGAGATTAAAGAGAGTGCTTTAGTATGGCACCATCAGGACGCAGACCCAGATTTTGGATCCTGCCAAGCAAAAGAATTGATGGATCATTTGGAAAATGTACTTGCAAATGAGCCAGCAGTTGTGAAAAGGGGCCAGCATATCGTTGAAGTTAAACCACAGGGAGTGAGCAAGGGGTTGGTGGCAGAGAAGGTTCTCTCAACAATGGTCAATGATGGAAAGCCTCCAGATTTTGTAATGTGCATTGGAGATGATAGATCTGATGAAGACATGTTTGAGGGAATATTCAGGACGATATCTAGCCCGTCTCTGTCTATGAGTCCAGAGATCTTTGCCTGCACTGTGGGACAAAAGCCGAGCAAGGCCAAGTACTATCTTGATGATACTACTGATGTTGTGAGATTGCTTCAAGGCCTAGCTACTGCTTCAAATCCAAAGCCTAGGTATATTGCTCAAATCCAGGTTTCTTTTGAAAGTTCCATTTGA 1932 42.81 MASRSCANFLDLASGSLLDIPHTPRPLPRVMTRKIIVANMLPLHAQRDKVTAKWCFSLDEDALLLHLKDGFSPETEVIYVGSLKVEIDASEQEEVAQKLLEDFNCVPTFLPHDLHKKFYHGFCKQQLWPLFHYMLPMKRFHRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNCDLIGFQTFDYARHFLSCCSRMLGLDYESKRGHIGLDYSGRTVYIKILPVGVHMGRLESVLNLHSTSAKIKEIQKQFEGKKLILGVDDMDIFKGISLKFLAVEQLLQQHPELQGKLVLVQIVNPARSTGKDVQEAKRETYLTAERINETYGSPNYEPVILIDRPVARYEKSAYYAVAECCIVNAVRDGMNLVPYKYIVCRQGTPHMDKETGMNLQLGKRCWGIVISVLSTLCSDPKNTVFIVSGRGRSSLSEWLAPCERLGIAAEHGYFMRWNESTKWESCNLAADLDWKKVVEPVMRLYTETTDGSNIEIKESALVWHHQDADPDFGSCQAKELMDHLENVLANEPAVVKRGQHIVEVKPQGVSKGLVAEKVLSTMVNDGKPPDFVMCIGDDRSDEDMFEGIFRTISSPSLSMSPEIFACTVGQKPSKAKYYLDDTTDVVRLLQGLATASNPKPRYIAQIQVSFESSI* 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8958842 8962074 + Vvi1g745 Vvi1g745 769945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g745 643 Gene3D Glycogen Phosphorylase B; 29 139 - -
Vvi1g745 643 Gene3D - 401 608 IPR023214 -
Vvi1g745 643 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 33 137 IPR001830 GO:0003824|GO:0005992
Vvi1g745 643 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 398 635 IPR001830 GO:0003824|GO:0005992
Vvi1g745 643 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 32 IPR001830 GO:0003824|GO:0005992
Vvi1g745 643 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED 398 635 - -
Vvi1g745 643 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 399 575 IPR006379 -
Vvi1g745 643 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED 138 388 - -
Vvi1g745 643 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED 1 32 - -
Vvi1g745 643 Pfam Trehalose-phosphatase 398 611 IPR003337 GO:0003824|GO:0005992
Vvi1g745 643 CDD GT20_TPS 33 378 IPR001830 GO:0003824|GO:0005992
Vvi1g745 643 Gene3D Glycogen Phosphorylase B; 140 232 - -
Vvi1g745 643 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 138 388 IPR001830 GO:0003824|GO:0005992
Vvi1g745 643 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED 33 137 - -
Vvi1g745 643 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 33 375 - -
Vvi1g745 643 CDD HAD_TPP 398 616 - -
Vvi1g745 643 SUPERFAMILY HAD-like 397 622 IPR036412 -
Vvi1g745 643 Pfam Glycosyltransferase family 20 33 136 IPR001830 GO:0003824|GO:0005992
Vvi1g745 643 Pfam Glycosyltransferase family 20 138 377 IPR001830 GO:0003824|GO:0005992
Vvi1g745 643 Gene3D - 457 536 - -
Vvi1g745 643 Gene3D Glycogen Phosphorylase B; 233 400 - -
Vvi1g745 643 TIGRFAM T6PP: trehalose-phosphatase 399 622 IPR003337 GO:0003824|GO:0005992
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g745 Vvi17g717 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g745 K16055 - vvi:100246842 754.207