Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g748 ATGAATCCCTTCTCGTCCGGAACGCGCCTGAGGGACATGATTCGGGCTATCCGTGCTTGCAAAACCGCAGCAGAGGAACGTGCTGTTGTAAGAAAGGAATGTGCTGCTATTCGTGCATCAGTCAGTGAAAATGATCATGACTATAGGCACCGTAACCTAGCAAAGCTCATGTTCATTCACATGCTTGGTTACCCCACACATTTTGGTCAAATGGAGTGCCTGAAATTGATTGCAGCGGCTGGATTTCCGGAAAAGAGAATAGGATATCTTGGCCTCATGTTGCTTCTTGATGAAAGGCAAGAAGTTCTTATGTTGGTTACAAACTCATTAAAACAAGATCTCAATCATAACAACCAGTACATTGTGGGACTTGCTCTTTGTGCTCTGGGAAATATTTGTTCAGCAGAAATGGCTCGTGATCTTGCACCTGAAGTGGAGAGATTGATGCAATTTCGAGATCCAAATATTCGGAAAAAAGCAGCATTATGCTCTATAAGGATTATAAGGAAAGTTCCAGATCTGGCAGAAAATTTTATGCATCCTGCTACCAACTTACTTAAAGAAAAGCACCATGGAGTTTTGATAACTGGAGTTCAGCTTTGTACAGAGATATGCAAAGTCAGCGTGGAAGCCCTTGAACATTTTAGGAAGAAGTGCACAGAGGTTTTGGTCAAAGTTCTAAAGGATGTTGTGAACAGTCCTTATGCACCTGAGTACGATATTGCTGGGATTACAGACCCTTTCCTCCATATCAGATTGCTTAGGCTTTTACGGGTGCTGGGCCAAGGTGATGCAGATGCTAGTGACTGTATGAATGACATTCTTGCTCAGGTGGCAACAAAAACTGAGTCAAACAAAAATGCTGGGAATGCCATTTTGTATGAATGTGTTGAAACTATTATGAGCATTGAAGATACTAGTGGCTTACGTGTGCTTGCCATCAATATCTTGGGAAGATTCTTGTCAAATCGTGACAACAATATCAGATATGTTGCATTGAATATGCTGATGAAGGCTATTACAGTAGATGCGCAAGCAGTGCAGAGGCATCGGGCAACAATTTTGGAATGTGTAAAGGATTCAGATGCTTCAATTCGGAAAAGGGCCCTTGAACTTATTTATGTTCTAGTGAATGACAGCAATGTGAAGCCTTTGGCAAAAGAGCTAATTGATTATCTTGAAGTAAGCGATCCAGAATTCAAGGGAGATCTGACCGCCAAAATTTGCTCAATTGTTGAAAAGTTTTCCCCTGAGAAAATATGGTACATTGATCAGATGCTCAAGGTTCTTTCTGAGGCTGGAAATTTTGTAAAAGATGAAGTCTGGCATGCCCTTATTGTTGTAATAAGCAATGCTTCTGACCTCCATGGATATACAGTAAGGTCCCTTTACAGAGCATTCCAAGCATCAGTGGAACAGGAATGCCTTGTACGAGTGGCGGTCTGGTGCATTGGAGAATATGGTGAAATGTTAGTCAATAATGTTGGAATGCTTGATATAGAGGAACCTATAACTGTAACAGAGTCTGATGCTGTGGATGTCATTGAGATTGCCATTAAGCGCCATACCTCAGATCTCACAACTCGAGCTATGGCTTTGATTGCTCTCTTAAAGCTTTCATGTCGTTTCCCATCTTGTTCAGAGAGGATAAGGGATATAATTGTCCAGTGTAAAGGAAGCCTTGTGCTTGAATTGCAGCAGAGATCCATTGAATTTAATTCCATTATTGGGAAGCATCAAAATATCAGGTCTGTGCTGGTAGAAAGGATGCCAGTTCTGGATGAGGCAACTTACAATGGAAGGAGGGCTGGTTCTATGCCAGCAACTGTTTCAATGTCAAGTGGGGCTTCACTTAATCTTCCAAATGGAGTTGCCAAACCCCCTGCTGCTCCTCTTGTAGATTTACTTGATCTAAGTTCAGATGATACCCCTGCACCTAGTTCTTCTGGTGGTGATTTCCTTCATGATCTTCTTGGTGTTGACTTATCTGTGGGTTCATCATTGTCAGGTATGACTCAGGTTCCAAAAGCTGGTACAGATGTTCTCCTGGATCTTCTGTCAATTGGAACACCTCCTCCGGCACAAAGCAGCTTATCTACACCTGATATTTTATCTTCTAGTCAAGATAACAAGATGCCAGCTCCCACATTAGAAAGACTGTCATCACCTTCTTCAATATCCATTCAAGCCTCATCTCCTGCAGGGGCTGCTCCTATGATGGATTTGTTGGATGGCTTTGCCCCCAACCTACCATTGCCTGAGGACAATGGTCCTGTTTATCCATCTATAGTCGCATTTGAGAGCAGTGCCTTGAGGCTAACGTTCAACTTCTCCAAGACACCTGCAAATCCGCAAACAACATTGGTCCAGGCCAGTTTTACAAATTTGTCACCTAATATCTTTACAGATTTTATTTTCCAGGCAGCAGTCCCAAAGTTTCTTCAGTTGCACTTAGATTCAGCCAGTGGCAACACACTTCCTGCAAGTGGAAATGGGTCTATCACACAAAATTTGCGAGTTACTAACAGCCTACATGGGAAGAAACCTCTTGTCATGCGCATAAGGATAGCTTACAAGATGAACAACAAGGATGTCTTGGAGGAAGGACAAATCAACAATTTCCCTCGTGACTTATGA 2637 42.4 MNPFSSGTRLRDMIRAIRACKTAAEERAVVRKECAAIRASVSENDHDYRHRNLAKLMFIHMLGYPTHFGQMECLKLIAAAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHNNQYIVGLALCALGNICSAEMARDLAPEVERLMQFRDPNIRKKAALCSIRIIRKVPDLAENFMHPATNLLKEKHHGVLITGVQLCTEICKVSVEALEHFRKKCTEVLVKVLKDVVNSPYAPEYDIAGITDPFLHIRLLRLLRVLGQGDADASDCMNDILAQVATKTESNKNAGNAILYECVETIMSIEDTSGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDSDASIRKRALELIYVLVNDSNVKPLAKELIDYLEVSDPEFKGDLTAKICSIVEKFSPEKIWYIDQMLKVLSEAGNFVKDEVWHALIVVISNASDLHGYTVRSLYRAFQASVEQECLVRVAVWCIGEYGEMLVNNVGMLDIEEPITVTESDAVDVIEIAIKRHTSDLTTRAMALIALLKLSCRFPSCSERIRDIIVQCKGSLVLELQQRSIEFNSIIGKHQNIRSVLVERMPVLDEATYNGRRAGSMPATVSMSSGASLNLPNGVAKPPAAPLVDLLDLSSDDTPAPSSSGGDFLHDLLGVDLSVGSSLSGMTQVPKAGTDVLLDLLSIGTPPPAQSSLSTPDILSSSQDNKMPAPTLERLSSPSSISIQASSPAGAAPMMDLLDGFAPNLPLPEDNGPVYPSIVAFESSALRLTFNFSKTPANPQTTLVQASFTNLSPNIFTDFIFQAAVPKFLQLHLDSASGNTLPASGNGSITQNLRVTNSLHGKKPLVMRIRIAYKMNNKDVLEEGQINNFPRDL* 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8992773 9017978 - Vvi1g748 Vvi1g748 769948

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g748 878 ProSiteProfiles Gamma-adaptin ear (GAE) domain profile. 758 875 IPR008153 -
Vvi1g748 878 Pfam Adaptin N terminal region 27 578 IPR002553 GO:0006886|GO:0016192|GO:0030117
Vvi1g748 878 PANTHER AP-1 COMPLEX SUBUNIT GAMMA 5 878 - -
Vvi1g748 878 SUPERFAMILY ARM repeat 25 593 IPR016024 -
Vvi1g748 878 MobiDBLite consensus disorder prediction 692 731 - -
Vvi1g748 878 Pfam Adaptin C-terminal domain 761 875 IPR008152 GO:0006886|GO:0016192
Vvi1g748 878 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 5 878 - -
Vvi1g748 878 SUPERFAMILY Clathrin adaptor appendage domain 732 877 IPR013041 -
Vvi1g748 878 Gene3D - 748 877 - -
Vvi1g748 878 Gene3D - 2 594 IPR011989 -
Vvi1g748 878 PIRSF AP1_gamma 6 878 IPR017107 GO:0005794|GO:0016192|GO:0030121
Vvi1g748 878 SMART alpha_adaptinc2 755 875 IPR008152 GO:0006886|GO:0016192
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g748 K12391 AP1G1; AP-1 complex subunit gamma-1 - vvi:100241508 1634.39
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g748 . . . . . . Bma14g01783 Bma15g00193 . . . . . . . . Cpe01g01517 . . . . . . . . . . . . . . Cone13ag1027 Cone19ag1018 . Cone12ag0633 Lsi04g00530 Csa05g02352 Chy10g00919 Cme10g00507 Blo06g00868 Blo11g00903 Bda07g01592 . . . . . . . . Cma04g01713 . Car04g01746 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005001 2 3 2 3 1 1 2 1 1 1 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 41