Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g75 ATGTATCGGCCGGTGGCTACAGCCCCGACTCAGGGTGGAATAGCCACCGAAAGTGCAGACTATGTGGTTGAACTCAATCAAGTTCCACGGTGGAGTGATGCGGAGCATAAATCTTCTTTGGAATATGACAATGAAGATTCTTCTTTTCCAACTTCATACTTTCCAGATCCTCTAACCTCAACATCTGAGGCAGAGAGTGGTGGCAATGGGATGATGTCCAGGTTTCCTGTTAATCATGAAATTAACTCAAAGATATATCTATGGAGGGGAAATCCATGGAATCTTGAGGTAGATGCGGTTGTTAACTCCACAAATGAGAACTTGGATGAAGCACACAGCAGCCCTGGTCTGCATGCTGCAGCTGGGCCTGGTCTAGCAGAAGAGTGTGCAACATTGGGTGGATGCCGTACAGGGATGGCTAAAGTAACTAATGCGTACGACCTTCCTGCTAGGAGGGTTATTCATACTGTGGGTCCCAAGTATGCAGTAAAATATCATACTGCTGCAGAGAATGCTTTGAGTCACTGCTATCGGTCTTGCCTTGAACTTCTTATAGAAAATGGCCTTCAGAGCATTGCTATGGGCTGCATATATACAGAGGCTAAAAATTATCCTCGGGAACCAGCTGCACATGTGGCTATAAGGACAGTGAGGCGGTTTCTTGAGAAGCAGAAGGATAAAATTACTGCTGTTGTCTTCTGTACTACCACAGCAAATGATACTGAGATATATAAAAGATTGCTTCCACTTTATTTTCCTCGGGATAAACATGAAGAGGAGGTGGCAATGTCAAAGCTTCCTGCAGATGTAGGGGATGAGAATGGTGAAACAATCATAGATGAACGTAAAATCAGAATAAAGCCTCTGCCCAAAAAGACTGCTCCTAAACCTCCCAAAGCCCCAGTTGATCTTCCTGTCAGTGATGTTGGATTGATACGGCGCAGGAATTCATCATATTTGGATTCATATCTGGATCCTGCTTTCATGTCCTTAATTAAAGATCCAGATCAGAGGCGTAAAGAGCAATGGGAAAAAACTGCTCAAGCACAGAGTGGATGGAATTGTGCTAAATTGCTTGGATTTGGTGACCTTGGTGGACCTCCATTATCTGCTGCTGAAGAATACTCTCTTCATTCTAGATACCTTAGTAAAGCAAATTCTCTTAATCTTTCTGAAATTGCAGAAATGAAAATTGTTTACCGTGGTGGTGTAGACAGTGAGGGCCGTCCCATAATGGTTGTTGTGGGAGCACATTTTCTTCTGCGATGTCTGGATCTTGAGCGGTTTGTGTTCCATGTAGTAAAGGAGTTTGAGCCTGTGATACAGAAGCCTTATACTATTGTTTACTTCCACTCAGCAGCATCGTTGCAGATCCAACCGGATTTGGGATGGATGAGGAGATTACAGCAAATACTTGGTCGGAAACACCAGCGTAACCTTCATGCAATTTATGTTCTTCACCCGACATTTGGATTGAAGGCTGCAGTTTTTGCTCTGCAATTGTTTGTAGATAATGTGGTGTGGAAGAAAGTGGTATATGTTGACCGACTCATGCAGCTGTTCAGATACGTTCCACGTGAGCAGTTGACAATCCCCGACTTTGTGTTTCAGCATGATTTAGAAGTGAATGGAGGGAAGGGCCTCATGGTGGATCCCAGAACAAAATATGTATATCATCGGCCATGA 1686 43.83 MYRPVATAPTQGGIATESADYVVELNQVPRWSDAEHKSSLEYDNEDSSFPTSYFPDPLTSTSEAESGGNGMMSRFPVNHEINSKIYLWRGNPWNLEVDAVVNSTNENLDEAHSSPGLHAAAGPGLAEECATLGGCRTGMAKVTNAYDLPARRVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLQSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQKDKITAVVFCTTTANDTEIYKRLLPLYFPRDKHEEEVAMSKLPADVGDENGETIIDERKIRIKPLPKKTAPKPPKAPVDLPVSDVGLIRRRNSSYLDSYLDPAFMSLIKDPDQRRKEQWEKTAQAQSGWNCAKLLGFGDLGGPPLSAAEEYSLHSRYLSKANSLNLSEIAEMKIVYRGGVDSEGRPIMVVVGAHFLLRCLDLERFVFHVVKEFEPVIQKPYTIVYFHSAASLQIQPDLGWMRRLQQILGRKHQRNLHAIYVLHPTFGLKAAVFALQLFVDNVVWKKVVYVDRLMQLFRYVPREQLTIPDFVFQHDLEVNGGKGLMVDPRTKYVYHRP* 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 741221 751123 + Vvi1g75 Vvi1g75 769275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g75 561 Pfam Macro domain 101 213 IPR002589 -
Vvi1g75 561 CDD Macro_GDAP2-like 83 251 IPR035793 -
Vvi1g75 561 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 386 535 IPR001251 -
Vvi1g75 561 PANTHER APPR-1-P PROCESSING ENZYME FAMILY PROTEIN 1 541 - -
Vvi1g75 561 SMART YBR022w_8 84 213 IPR002589 -
Vvi1g75 561 MobiDBLite consensus disorder prediction 44 68 - -
Vvi1g75 561 SUPERFAMILY CRAL/TRIO domain 390 529 IPR036865 -
Vvi1g75 561 CDD SEC14 396 532 IPR001251 -
Vvi1g75 561 Gene3D Leucine Aminopeptidase, subunit E, domain 1 15 257 IPR043472 -
Vvi1g75 561 PANTHER GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED 1 541 - -
Vvi1g75 561 SUPERFAMILY Macro domain-like 73 281 IPR043472 -
Vvi1g75 561 ProSiteProfiles Macro domain profile. 72 252 IPR002589 -
Vvi1g75 561 Pfam Divergent CRAL/TRIO domain 408 539 IPR001251 -
Vvi1g75 561 MobiDBLite consensus disorder prediction 38 71 - -
Vvi1g75 561 SMART sec14_4 392 538 IPR001251 -
Vvi1g75 561 Gene3D - 391 542 IPR036865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g75 K24997 GDAP2; ganglioside-induced differentiation-associated protein 2 - vvi:100247494 1098.19
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g75 Blo01g00446 Blo16g01097 Bda01g02135 Bda11g01188 Bpe13g01386 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0547 Cone9ag0558 . . . . . . . Bda11g01188 . . Bma01g00115 Bma06g00726 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01744 Chy09g00682 Cme09g00680
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003700 3 2 2 2 1 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 3 1 1 3 2 1 46