Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g754 ATGGAACCAAAATCAGTCCATCATGGCCCTTCCATCACCTCCAAGAAGGAGGTTCATGCCGAAAATGGAAGCTCTGATGCCAAAGCCTCATCTCCTACCTGTTTGGTTTATGGTGTGAGAACGGTGAATAAACTGAGATTGTCCAAAGCCCTCATGATTCCTGAAGGAATCACCGTGTCTGATGCATGCCGAATGATGTCAGCTCGGAAAGTGGATGTTGTTTTGTTGACAGATTCAAATGCGATTCTCTCTGGAATTGTTATAGACAAGGATATCGCCACTAGAGTTATAGTGGAAGAACTGAGGCCAGAACAGACGGCAGTTTCAAAGATTATGACAAGGCATCCAATTTTGGTCAACTCAGATTCGTTGGCTATTGAGGCTCTTGAAAAAATGGTGCAAGGCAAAAGGTTGCGGAGCATGGTAGTGCAATCGTGGCTACTGTTGAAGGGGCAGAACGCCAATGGGAAAGCAATTTCTCTGCTCCGTATAGTTTTATCGAAATGCTCAGGGAGTGGATGTTCAAGCTTGCTTTGTCAACTATCATTTCGGAAAATACCAAGATTCAAGAAAAGGGAGTGTGGAGATCAGGGCTCTGAGCCCATTAAACGTGAGCGCCCTTCAAAAACTGATGATGGGGATTCTGGTCACTCTAGACCAGAGAGCGTTTGGAAATCTGAGATTGCTAAAATTACAGAAATGGGAGGGCTTGTTGATTCAGAAGGGGTTGAGAGACTTGTGCAACTCATGCAGCCTGAGAGAGCTGAGAAGAAAATAGACTTGATTGGTCGTTCAATTCTTGCAGGTGTTATAGCTGCCACAGAGGAGTATGATTGCCTTGGTCGATTTGTCCAGCTCAGGGGCTTGCCTGTATTGGATGAATGGCTCCAAGAGATACATAAAGGAAAGATTGGTGATGGTAGTAGCCCCAAGGATAGTGATAAATCTGTTGAGGAATTCCTATTGGTTTTACTTCGAGCACTCGATAAGCGGCCTGCGAATCTTCAAGCCCTTCAAATGTGTAACATTGGCAAATCTGTTAATCATTTACGTAGTCATAAAAACTAA 1068 44.19 MEPKSVHHGPSITSKKEVHAENGSSDAKASSPTCLVYGVRTVNKLRLSKALMIPEGITVSDACRMMSARKVDVVLLTDSNAILSGIVIDKDIATRVIVEELRPEQTAVSKIMTRHPILVNSDSLAIEALEKMVQGKRLRSMVVQSWLLLKGQNANGKAISLLRIVLSKCSGSGCSSLLCQLSFRKIPRFKKRECGDQGSEPIKRERPSKTDDGDSGHSRPESVWKSEIAKITEMGGLVDSEGVERLVQLMQPERAEKKIDLIGRSILAGVIAATEEYDCLGRFVQLRGLPVLDEWLQEIHKGKIGDGSSPKDSDKSVEEFLLVLLRALDKRPANLQALQMCNIGKSVNHLRSHKN* 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9151012 9165751 + Vvi1g754 Vvi1g754 769954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g754 355 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 278 354 IPR035441 -
Vvi1g754 355 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 180 355 - -
Vvi1g754 355 SMART TFS2_5 296 355 IPR003617 GO:0005634
Vvi1g754 355 MobiDBLite consensus disorder prediction 1 30 - -
Vvi1g754 355 ProSiteProfiles TFIIS N-terminal domain profile. 290 355 IPR017923 -
Vvi1g754 355 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 180 355 - -
Vvi1g754 355 MobiDBLite consensus disorder prediction 1 23 - -
Vvi1g754 355 SUPERFAMILY CBS-domain pair 40 143 IPR046342 -
Vvi1g754 355 Pfam CBS domain 49 94 IPR000644 -
Vvi1g754 355 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 240 355 IPR035441 -
Vvi1g754 355 MobiDBLite consensus disorder prediction 193 222 - -
Vvi1g754 355 Gene3D - 14 150 IPR046342 -
Vvi1g754 355 ProSiteProfiles CBS domain profile. 42 104 IPR000644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g754 - - - vvi:100248456 308.531
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g754 Vvi17g704 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g754 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021049 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 2 3