Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g76 ATGGTACAATGTGTGTCAGTAAGCACTCTGACAACCTCTGGAAATGGTGGGGTTTATGGGTCCACTGCTTTATGGGGGAGACATTTCCAGTTAATGAGAAAAACCCAGATTCGCACAGGGAGTGAAAGAAATTTTCTTTGGCATCACTGTGCACAGAGATTATTCTTTGCCGGTCAACTTGTTATGCAGAGGCAAAGGAATTTGAGGGTTGAAGCTGGATGGCTGTTTAAAGGTGGTGGTGACCAGGGGTTAGATGCAAGCTCAGAGTGTAGTGAGAGTGCTAATGAGGATATTTTGATTTTCTTTTTCCAGCTGGACTTGGCGACTCGAGTACAGTATGCTTTGAATACGGAGCAGTATGAAATAGCGCAACAACTGAGAGATAAGCTGACTGAGGTTGAAGCAGAGGTTGTCAAGCAGCGAGAAGCAAAAAGGGGATCCACATCAAAGAGTGAAGCTCAAGACAAAGCTTTAAGTATGATACGTCTACGGGCAGACCTGCAGAAAGCGATTGAGGCAGAAAACTATGCATTGGCAGCTGAGTTGCGAGATGAAATTAACAAACTAGAGGCAGAGTCTCTGGCTGCATCAGCAAATGCTCTGGTGTATGAAAATACACCATATGCATTTCGTTTGGGCCAGAAAGTGAGGCATAAAGTGTTTGGCTATTCTGCTGTGATTTGTGGAATGGATCCAGTGTGCTGTGAATCAAGTTCATGGAGGGAAAGCGCACATGTTGATAAGTTGACTCGGGGTTCTAATCAGCCATTTTATCAGGTATTGGTTGATGTACATGTAGACCCCAATCTATTAGTGGCATATGTTCCAGAGGAGAATTTGCTGGTCCCTGATGGACCAAGACCAAACAAGGGCAGGTTTGATCACCCCTATCTTTCTTTTTTATTTTACGGCATGGATGCAGCTGGAGATTTCATTCCAATCAAGCAGCTCCGGGAGAAGTACAATAGGCCCCGGCATGAAGTGCCTGGTGATCCACCAGGCGAGGGTGGAGAAGATGCTTAA 1023 45.26 MVQCVSVSTLTTSGNGGVYGSTALWGRHFQLMRKTQIRTGSERNFLWHHCAQRLFFAGQLVMQRQRNLRVEAGWLFKGGGDQGLDASSECSESANEDILIFFFQLDLATRVQYALNTEQYEIAQQLRDKLTEVEAEVVKQREAKRGSTSKSEAQDKALSMIRLRADLQKAIEAENYALAAELRDEINKLEAESLAASANALVYENTPYAFRLGQKVRHKVFGYSAVICGMDPVCCESSSWRESAHVDKLTRGSNQPFYQVLVDVHVDPNLLVAYVPEENLLVPDGPRPNKGRFDHPYLSFLFYGMDAAGDFIPIKQLREKYNRPRHEVPGDPPGEGGEDA* 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 751778 759740 + Vvi1g76 Vvi1g76 769276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g76 340 Pfam Hemimethylated DNA-binding protein YccV like 209 307 IPR011722 GO:0003677
Vvi1g76 340 PANTHER SI:DKEY-261L7.2 88 333 - -
Vvi1g76 340 Coils Coil 172 199 - -
Vvi1g76 340 SUPERFAMILY YccV-like 209 306 IPR036623 GO:0003677
Vvi1g76 340 Coils Coil 116 143 - -
Vvi1g76 340 Pfam UvrB/uvrC motif 161 191 IPR001943 GO:0005515
Vvi1g76 340 Gene3D - 207 309 IPR036623 GO:0003677
Vvi1g76 340 SMART YccV_like_2_a 209 313 IPR011722 GO:0003677
Vvi1g76 340 PANTHER SI:DKEY-261L7.2 88 333 - -
Vvi1g76 340 TIGRFAM yccV: hemimethylated DNA binding domain 208 311 IPR011722 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g76 - - - vvi:100266199 650.588
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g76 . . . Bda11g01189 Bpe13g01387 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0548 . . . . . . . . Bda11g01189 . . . Bma06g00725 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010259 2 3 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 31