Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g761 ATGTGGAGTTTTAAACTTATGCTAGTGATGTTAGTAATAGAGTCGTTGGAGATGGGCCTAAATACCATAAGCAAAGCAGCCATGAGTAGAGGGATGAGCAACTTCGTCTTTGTTGTTTACTCTAACACCTTTGCCATTCCCTTCCTTCTTCTTTCATGCCTTCTCTTTCACAGAAGAAAAACCCCTCCTCCACTCACCACTTCCATCCTCTGCAGAATCTTTGTTCTTGGCCTCATCAGTTGTTCAATACAGATGTTTATGTATGTTGGAATAAGGTATAGCTCTCCAACCTTAGCCTCAGCCATGACTGATCTGGTCCCTGCTTTTACCTTCATACTTGCCATCATTACCAGGATGGAAAATCTAGACTTGAGAGTCCGCAGTAGTCGCGCCAAATCTATTGGCACCATAATGTCCATCACAGGAGCACTCACTATGACGATGTATGAAGGTCCTCCAGTTGCGTTCACCTCATTAACTTCTACCAAACTCAATGGAAATGTTACGTTGCCACAATCAAACTGGGTTATAGGAGGTATTCTCTCTGCAATTGCTGCCTTCATGCTTGCAGTTTTGTTTGTTTTCCAGACCTCCATTATTAGAGCCTACCCTGCAGAGCTGATGGTAACACTCATTTGTTGCACCTTCGTGGCCATGCAATCTTCCATAGTCTCTCTGATGGCAGAAAGGAATCCAAGCGCTTGGAGATTAAGACCAGACATAGAGTTGATAGCTATTGTATACTCAGCAGTTCTTGTAGTTGGACTTCGAAGTGTTGCTTCTGCATGGGTAATGCGCAGAAAGGGGCCTTTCTTTGCAGCCATGTTTAAGCCAGTTGGGATCATAATTGCAGTTGTGATGGGGGTCACTTTTCTTGGAGATACTCTCTATCTTGGAAGTGTGGTTGGAGCTGCTATAATAGCTATTGGGTTTTATACAGTGATGTGGGGGAAGGATAAAGAGGAGACGCTACTTGAAGACGTCCCAGCCCATGGCATGGAATCATCCTCCCACAACGTCCCTCTTTTGCAAAACAAAACTTTCCAGGCTTAG 1053 44.25 MWSFKLMLVMLVIESLEMGLNTISKAAMSRGMSNFVFVVYSNTFAIPFLLLSCLLFHRRKTPPPLTTSILCRIFVLGLISCSIQMFMYVGIRYSSPTLASAMTDLVPAFTFILAIITRMENLDLRVRSSRAKSIGTIMSITGALTMTMYEGPPVAFTSLTSTKLNGNVTLPQSNWVIGGILSAIAAFMLAVLFVFQTSIIRAYPAELMVTLICCTFVAMQSSIVSLMAERNPSAWRLRPDIELIAIVYSAVLVVGLRSVASAWVMRRKGPFFAAMFKPVGIIIAVVMGVTFLGDTLYLGSVVGAAIIAIGFYTVMWGKDKEETLLEDVPAHGMESSSHNVPLLQNKTFQA* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9257530 9285762 + Vvi1g761 Vvi1g761 769961

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g761 350 PANTHER WAT1-RELATED PROTEIN 13 320 IPR030184 GO:0016021|GO:0022857
Vvi1g761 350 SUPERFAMILY Multidrug resistance efflux transporter EmrE 237 319 - -
Vvi1g761 350 PANTHER WAT1-RELATED PROTEIN 13 320 - -
Vvi1g761 350 SUPERFAMILY Multidrug resistance efflux transporter EmrE 44 148 - -
Vvi1g761 350 Pfam EamA-like transporter family 178 315 IPR000620 GO:0016020|GO:0016021
Vvi1g761 350 Pfam EamA-like transporter family 9 145 IPR000620 GO:0016020|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g761 - - - vvi:100253486 677.937
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g761 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004025 2 2 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 3 0 1 1 2 1 1 1 3 1 1 1 7 43