Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g769 ATGGCTTCCACTTCCACTTCCGCCATTTGCCTCTACTCTCACCCAATGGTACTCTCTTCCTCTTCCTCTCAAAGCCCGAATCTCACCTTCTGCTCTGATTCGCAGATTTCACATCGTGCCCGCCCCCGGAATTTGCGGAGCCAGGTTTTGGGCAGCTCATGGTGGGGCTATTGTGCGCTTTTACCCACTAGCGTCTATGTGAGTAGTATTAGGCATTATAGATTCAGGACATTGGTCACAGTGGCTGCTTCCACGGCTGATGGAGTTCCGAGGCGGCCGGTCAGTGGTCGGAGAGTTTTCAAGCAATCTCAAGGCCAAGGGCCTTTAAGCCCTGTTCCCGTTAGGGAGATTGCCTCGTTTGTTGTTCCGGCCAGTTTGTTTTTCGCCGTCACTTTCGTTTTATGGAGATTGGTGGAGAAGATTCTGCTGCCAAAATCATCAAGGTCTTCATCACTAGAAAAGAAATCCTCCTCACCAGGAGTGAAATGGTCCTTTGCCCCAGGTACAAATTTGCTAGCAGGTCTCACTGCAAAGTTTGACAGAGAGTCCAAGCAGAAGCTCAATGAATTTGCCAAAGAAATTAGGTCATTTGGAAGTGTTGACATGTCAGGACGAAATTTTGGAGATGAAGGACTCTTTTTTCTTGCTGAGAGCTTAGCCTACAATCAGAATGCGGAGGAAGTGAGTTTTGCTGCTAATGGAATAACTGCAGCTGGATTGAAAGCCTTTGATGGTGTTCTTCAATCAAACATTGTGTTAAAGACCCTTGATCTTTCAGGGAACCCTATTGGGGATGAAGGAGCTAAGTGCCTATGTGATATATTGATTGATAATGCTGGTATTCAAAAGCTTCAACTAAACAGTGCTGACCTGGGGGATGAGGGGGCAAAGGCTATTGCAGAGATGTTGAAGAAAAATTCAAGCTTGCGTATCGTTGAGCTTAACAACAATATGATTGATTATTCTGGATTTACAAGTCTTGGTGGAGCGCTTCTTGAGAATAACACTATAAGAAATATTCATCTCAATGGCAACTATGGTGGTGCTCTGGGGGTTGCCGCTCTGGCGAAAGGGCTTGAAGCGAATAAGTCTTTGAGGGAACTTCATTTACATGGAAATTCTATTGGAGATGAAGGAGTCCGTGTTTTGATGTCTGGATTATCTTCACATAAAGGAAAACTTACACTTCTAGACATTGGCAACAATGAAATTAGCTCCAGAGGTGCTTTTCACGTTGCTGAATATATCAAGAAAGCCAAGAGTTTGCTATGGTTGAATCTTTACATGAATGACATTGGAGATGAGGGAGCGGAAAAAATCGCAGATGCTTTGAAGGAAAACCGCTCAATAGCAACTATAGACCTGGGGGGAAATAACATCCATGCAAAGGGTGTGAGTAAAATAGCTGGAGTATTGAAAGACAATACAGTCATTACAACTTTGGAATTAGGTTATAATCCCATAGGGCCTGAAGGAGCAAAGGCTTTATCTGAAGTTCTGAAGTTTCATGGGAAGATCAAAACCCTGAAGCTTGGTTGGTGTCAGATTGGAGCAAAGGGTGCAGAGTTCATTGCAGATACTTTAAAGTATAACACTACCATTTCAACTCTGGACTTGCGGGCAAATGGGCTTAGAGATGAAGGTGCAGTCTGTCTAGCTCGCAGCATGAAAGTTGTTAATGAGGCTTTAGCTTCACTTGATTTAGGGTTTAATGAAATAAGAGATGAAGGGGCATTTGCCATTGCTCAAGCACTCAAGGCTAATGAAGATGTGGCAGTCACGTCTCTAAACCTTGCGAGCAACTTCCTCACAAAATTTGGACAAAGTGCTCTGACAGATGCAAGAGATCATGTATATGAAATGAGTGAAAAGGAAGTCAACATTTTTTTCTAG 1893 43.58 MASTSTSAICLYSHPMVLSSSSSQSPNLTFCSDSQISHRARPRNLRSQVLGSSWWGYCALLPTSVYVSSIRHYRFRTLVTVAASTADGVPRRPVSGRRVFKQSQGQGPLSPVPVREIASFVVPASLFFAVTFVLWRLVEKILLPKSSRSSSLEKKSSSPGVKWSFAPGTNLLAGLTAKFDRESKQKLNEFAKEIRSFGSVDMSGRNFGDEGLFFLAESLAYNQNAEEVSFAANGITAAGLKAFDGVLQSNIVLKTLDLSGNPIGDEGAKCLCDILIDNAGIQKLQLNSADLGDEGAKAIAEMLKKNSSLRIVELNNNMIDYSGFTSLGGALLENNTIRNIHLNGNYGGALGVAALAKGLEANKSLRELHLHGNSIGDEGVRVLMSGLSSHKGKLTLLDIGNNEISSRGAFHVAEYIKKAKSLLWLNLYMNDIGDEGAEKIADALKENRSIATIDLGGNNIHAKGVSKIAGVLKDNTVITTLELGYNPIGPEGAKALSEVLKFHGKIKTLKLGWCQIGAKGAEFIADTLKYNTTISTLDLRANGLRDEGAVCLARSMKVVNEALASLDLGFNEIRDEGAFAIAQALKANEDVAVTSLNLASNFLTKFGQSALTDARDHVYEMSEKEVNIFF* 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9369140 9379711 + Vvi1g769 Vvi1g769 769969

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g769 630 Pfam Leucine Rich repeat 447 469 IPR001611 GO:0005515
Vvi1g769 630 Pfam Leucine Rich repeat 362 383 IPR001611 GO:0005515
Vvi1g769 630 Pfam Leucine Rich repeat 282 300 IPR001611 GO:0005515
Vvi1g769 630 Pfam Leucine Rich repeat 475 497 IPR001611 GO:0005515
Vvi1g769 630 Pfam Leucine Rich repeat 530 553 IPR001611 GO:0005515
Vvi1g769 630 Pfam Leucine Rich repeat 563 582 IPR001611 GO:0005515
Vvi1g769 630 Pfam Leucine Rich repeat 250 272 IPR001611 GO:0005515
Vvi1g769 630 Pfam Leucine Rich repeat 425 441 IPR001611 GO:0005515
Vvi1g769 630 Pfam Leucine Rich repeat 506 525 IPR001611 GO:0005515
Vvi1g769 630 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN 563 617 - -
Vvi1g769 630 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN 178 559 - -
Vvi1g769 630 SUPERFAMILY RNI-like 199 389 - -
Vvi1g769 630 PANTHER NACHT, LRR AND CARD DOMAINS-CONTAINING 563 617 - -
Vvi1g769 630 PANTHER NACHT, LRR AND CARD DOMAINS-CONTAINING 178 559 - -
Vvi1g769 630 Gene3D Ribonuclease Inhibitor 498 628 IPR032675 -
Vvi1g769 630 SUPERFAMILY RNI-like 348 617 - -
Vvi1g769 630 SMART LRR_RI_2 560 587 - -
Vvi1g769 630 SMART LRR_RI_2 475 502 - -
Vvi1g769 630 SMART LRR_RI_2 306 333 - -
Vvi1g769 630 SMART LRR_RI_2 447 474 - -
Vvi1g769 630 SMART LRR_RI_2 419 446 - -
Vvi1g769 630 SMART LRR_RI_2 250 277 - -
Vvi1g769 630 SMART LRR_RI_2 362 389 - -
Vvi1g769 630 SMART LRR_RI_2 391 418 - -
Vvi1g769 630 SMART LRR_RI_2 278 305 - -
Vvi1g769 630 SMART LRR_RI_2 503 530 - -
Vvi1g769 630 SMART LRR_RI_2 531 558 - -
Vvi1g769 630 SMART LRR_RI_2 334 361 - -
Vvi1g769 630 Gene3D Ribonuclease Inhibitor 171 497 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g769 K22614 NLRC3, NOD3; NLR family CARD domain-containing protein 3 - vvi:100258814 1174.46
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g769 . . . . Bpe13g00481 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0644 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01684 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011878 1 3 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 28