Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g77 ATGTCATTACTTTTCAGAGTTAATTTAGCTATGATACTTTACATGCCCTTGTTCAGACGATGCGCCACCTCAACAACACTCACCCAACTCCATGCCCATCTCTTCATCACCGGCCTCCATAGACACCCACCTGCATCCACCAAACTCATTGAGTCCTATGCCCAAATTGGCATTTTTGAATCTTCCAAACGTGTCTTTGATACCTTCCCTAAACCCGATTCCTTCATGTGGGGTGTTCTGATCAAGTGCTATGTGTGGGGTGGATTCTTTGAAGAAGCCGTTTCACTTTACCATGAAATGGTGTACCAGGACCAGACCCAGATCAGTAACTTTGTGTTTCCATCAGTTTTGAAGGCGTGTTCCGGTTTTGGTGATCTGAGTGTTGGTGGGAAGGTTCATGGGAGAGTAATCAAATGTGGGTTTGAGTCTGATGCTGTTGTTGAGACCTCGTTGCTTTGTATGTATGGAGAAATGAGCTGTTTAGATGATGCTTGTAAGGCATTCGATACAATGCCAATAAGAGATGTGGTGGCATGGAGTTCCATTGTTCTGAACTTTGTTCAGAATGGACAAGCAAGTGAAGGGTTGGATATGTTTTCTCAGATGATCTCAGAAGCTAATGTTCCTTGTCGGATGACCGCTCCATGGACACCAATGATTTCCTGCTACAATCAAAGTGGATGTTTCCAAGAAGCCCTGAACGTTTTTGCTAAGATGCAGGAGTTTAAAATGGAACCCAATCAAGTAACCATGGTGGGTGTTCTGTGTGCTTGTGCTAGGTTGGGCAGGGTGAAGGAAGGGAGGTCAGTTCATGGCTTTGTCATCAGAAGAGCTATGGACCCAGAGTTAGATTTTCTGGGGCCAGCATTAATGGAGTTGTATGCTGATACTGGAAACTTAAGAGATTGCCATAAGGTTTTTGAAACTATTAAAGAGAAAACTATCCTCTCATGGAACACACTCATATCGATTTTCACCCGGAATGGGCAACCAGAGGAGGCCTTACTTCTCTTTAATGCCCTGATTGATATGTACGCCAAGTGTGGGTTTTGTAATTCAAGCTTGTTCCCATCTGGGTTACTTAGAAAAGGGAAAATGGGTTCACCACAAGCTCATCATGTATGGTTTAAGGAAGGACTCTTACCTTGA 1149 43.78 MSLLFRVNLAMILYMPLFRRCATSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEANVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFNALIDMYAKCGFCNSSLFPSGLLRKGKMGSPQAHHVWFKEGLLP* 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 760230 762137 + Vvi1g77 Vvi1g77 769277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g77 382 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Vvi1g77 382 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 289 342 - -
Vvi1g77 382 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 208 279 - -
Vvi1g77 382 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 22 206 - -
Vvi1g77 382 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Vvi1g77 382 Gene3D Tetratricopeptide repeat domain 9 105 IPR011990 GO:0005515
Vvi1g77 382 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 344 IPR002885 -
Vvi1g77 382 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 208 279 - -
Vvi1g77 382 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 22 206 - -
Vvi1g77 382 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 289 342 - -
Vvi1g77 382 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 73 107 IPR002885 -
Vvi1g77 382 Pfam PPR repeat 216 242 IPR002885 -
Vvi1g77 382 Pfam PPR repeat 317 339 IPR002885 -
Vvi1g77 382 Pfam PPR repeat 75 101 IPR002885 -
Vvi1g77 382 Pfam PPR repeat 177 204 IPR002885 -
Vvi1g77 382 Gene3D Tetratricopeptide repeat domain 214 285 IPR011990 GO:0005515
Vvi1g77 382 Gene3D Tetratricopeptide repeat domain 106 213 IPR011990 GO:0005515
Vvi1g77 382 Gene3D Tetratricopeptide repeat domain 286 351 IPR011990 GO:0005515
Vvi1g77 382 TIGRFAM PPR: pentatricopeptide repeat domain 76 101 IPR002885 -
Vvi1g77 382 TIGRFAM PPR: pentatricopeptide repeat domain 317 341 IPR002885 -
Vvi1g77 382 TIGRFAM PPR: pentatricopeptide repeat domain 216 247 IPR002885 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g77 Vvi14g1061 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g77 - - vvi:100260996 449.899