Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g77 ATGTCATTACTTTTCAGAGTTAATTTAGCTATGATACTTTACATGCCCTTGTTCAGACGATGCGCCACCTCAACAACACTCACCCAACTCCATGCCCATCTCTTCATCACCGGCCTCCATAGACACCCACCTGCATCCACCAAACTCATTGAGTCCTATGCCCAAATTGGCATTTTTGAATCTTCCAAACGTGTCTTTGATACCTTCCCTAAACCCGATTCCTTCATGTGGGGTGTTCTGATCAAGTGCTATGTGTGGGGTGGATTCTTTGAAGAAGCCGTTTCACTTTACCATGAAATGGTGTACCAGGACCAGACCCAGATCAGTAACTTTGTGTTTCCATCAGTTTTGAAGGCGTGTTCCGGTTTTGGTGATCTGAGTGTTGGTGGGAAGGTTCATGGGAGAGTAATCAAATGTGGGTTTGAGTCTGATGCTGTTGTTGAGACCTCGTTGCTTTGTATGTATGGAGAAATGAGCTGTTTAGATGATGCTTGTAAGGCATTCGATACAATGCCAATAAGAGATGTGGTGGCATGGAGTTCCATTGTTCTGAACTTTGTTCAGAATGGACAAGCAAGTGAAGGGTTGGATATGTTTTCTCAGATGATCTCAGAAGCTAATGTTCCTTGTCGGATGACCGCTCCATGGACACCAATGATTTCCTGCTACAATCAAAGTGGATGTTTCCAAGAAGCCCTGAACGTTTTTGCTAAGATGCAGGAGTTTAAAATGGAACCCAATCAAGTAACCATGGTGGGTGTTCTGTGTGCTTGTGCTAGGTTGGGCAGGGTGAAGGAAGGGAGGTCAGTTCATGGCTTTGTCATCAGAAGAGCTATGGACCCAGAGTTAGATTTTCTGGGGCCAGCATTAATGGAGTTGTATGCTGATACTGGAAACTTAAGAGATTGCCATAAGGTTTTTGAAACTATTAAAGAGAAAACTATCCTCTCATGGAACACACTCATATCGATTTTCACCCGGAATGGGCAACCAGAGGAGGCCTTACTTCTCTTTAATGCCCTGATTGATATGTACGCCAAGTGTGGGTTTTGTAATTCAAGCTTGTTCCCATCTGGGTTACTTAGAAAAGGGAAAATGGGTTCACCACAAGCTCATCATGTATGGTTTAAGGAAGGACTCTTACCTTGA 1149 43.78 MSLLFRVNLAMILYMPLFRRCATSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEANVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFNALIDMYAKCGFCNSSLFPSGLLRKGKMGSPQAHHVWFKEGLLP* 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 760230 762137 + Vvi1g77 Vvi1g77 769277

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g77 382 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Vvi1g77 382 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 289 342 - -
Vvi1g77 382 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 208 279 - -
Vvi1g77 382 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 22 206 - -
Vvi1g77 382 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Vvi1g77 382 Gene3D Tetratricopeptide repeat domain 9 105 IPR011990 GO:0005515
Vvi1g77 382 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 344 IPR002885 -
Vvi1g77 382 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 208 279 - -
Vvi1g77 382 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 22 206 - -
Vvi1g77 382 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 289 342 - -
Vvi1g77 382 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 73 107 IPR002885 -
Vvi1g77 382 Pfam PPR repeat 216 242 IPR002885 -
Vvi1g77 382 Pfam PPR repeat 317 339 IPR002885 -
Vvi1g77 382 Pfam PPR repeat 75 101 IPR002885 -
Vvi1g77 382 Pfam PPR repeat 177 204 IPR002885 -
Vvi1g77 382 Gene3D Tetratricopeptide repeat domain 214 285 IPR011990 GO:0005515
Vvi1g77 382 Gene3D Tetratricopeptide repeat domain 106 213 IPR011990 GO:0005515
Vvi1g77 382 Gene3D Tetratricopeptide repeat domain 286 351 IPR011990 GO:0005515
Vvi1g77 382 TIGRFAM PPR: pentatricopeptide repeat domain 76 101 IPR002885 -
Vvi1g77 382 TIGRFAM PPR: pentatricopeptide repeat domain 317 341 IPR002885 -
Vvi1g77 382 TIGRFAM PPR: pentatricopeptide repeat domain 216 247 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g77 - - - vvi:100260996 449.899
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g77 Vvi14g1061 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g77 Blo01g00445 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0918 . . . . . . . . . . . Bpe02g02324 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012959 0 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 3 1 1 1 1 0 1 0 1 0 1 1 1 26