Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g772 ATGACTGTCCATCGCTGTGCTTCAATGCTACATTTCAGCAGATTATCTTCTCCTCCTAGACTTCTCTCCCCGTTTAAAAGTTGCTATTCATCCCTCCTCGATCGTTCATCATCAGCACCATCTTCTTCTTTGCGAATTGGCCTTTATTGGCTGGACTCACCACGCCGCCGACGAACTAGGGCGTTTGGAACCGCCTCCGCTGCCTCCCAAGATCGGAATGGAGCCGAAACGTTCTTTGCCGACCAAGGCGTTTCGTGGGCGTCCCTCGGAGTATCCGACCGGCTCACCCGTGCTCTTTCCACCATAGGCATCGAAAGACCGTCTTTGGTTCAGGCTGCTTGTATACCCTATATACTTTCAGGCAATGATGTGGTAGTTGCAGCAGAGACTGGTAGTGGTAAAACGCATGGCTACTTAGTTCCACTAATTGATAAACTATGTGGCACACCCAATGATTCTGTGGATGCTTCAACTGATCAAGAATCAAGACATCTGCATCAGCTTTGTCTTGTTCTTTGTCCAAATGTGATGCTCTGTGAGCAAGTAGTTCAAATGGCTAACTGCCTTTGTGGTGATAATGGTGAACCACTTCTACGAGTGGTAGCTGTATGTGGACGACAGGGATGGCCAGTTAAAGAACCAGATATTATTGTTTCAACACCAGCTGCTTTTCTGAATAATCTTAATGCAATTGACCCAGAAAAACAGCGTCGTTCCAATTTTCTGCGTGGTGTGAAATGTGTGGTGTTTGACGAAGCAGATATGCTTCTTTGTGGGAGCTTTCAGAATCAAGTCATCCGTCTCATAGATATGCTTCGTTTTGATGAAAAGATATTGTCTCGCATAAAAAAATCGGTACCTGATAAGCAAATGGAATTGGAATCTGATTCCATGTTGCATTTTTATTCTGAATCTGAAAAAGACGAGGAGGAAACAGAGGAGCAAACTGAAATCATCTCAGATGAGGAGGAAAATGTTGTAGGGGAACCTGTTGTTGAAGGTTTCACAGAGGAGATTGAAGTTGGGTCTATCAAGAAAAAAGATTGGAGGAGAGTGAGAAAAAATTATGAGCGTAGTAAACAGTACATTTTTGTTGCAGCTACCCTTCCAGTTAATGGAAAGAAAACTGCTGGGGGAGTCTTAAAACGGATGTTTCCAGATGCCCATTGGGTTAGTGGAGGCTACCTACATTGTCACAATCCCAGATTGGAGCAGAAGTGGATTGAAGTCACAGTTGATACACAGGTGGATGCTCTCATAGATGCTGTGAAACAAGGGTTTAGATCCAAAGTGTTAGATTCTGGTGTTGGTGTGAGTCGAACCATGGTGTTTGCAAACACTGTTGAGGCTGTTGAAGCAATCTCAAAGATATTACACAGGGCTGGGGTTGAATGTTTCCGTTACCATAGAGATAGCTCTTTGGAGGAGCGCGCGAAGACTTTGGTTGATTTTCAACAGAAAGGTGGTGTTCTTGTGTGCACTGATTCTGCTGCACGTGGCCTTGACATTCCTAATATTTCGCATGTGATTCAGGCAGACTTTGCAACTTCCGCTTTAGATTTCTTGCACAGGGTTGGTCGAACAGCTAGAGCTGGTCAGTTTGGGCTTGTCACTAGCCTGTATACGGAATCCAACAGGGATCTTGTTGCTGCAATTCGCCAAGCAGATAAACTGGGTCAACCAGTGGATGCAGCATTTAGCAGAAAAAGGAGCTTCAGGAACAAACTTAAGAAGAGAGGTACCAACAAATTGGGAGATGTTGAAGAGAGAGTTCTAGCATAA 1782 44.56 MTVHRCASMLHFSRLSSPPRLLSPFKSCYSSLLDRSSSAPSSSLRIGLYWLDSPRRRRTRAFGTASAASQDRNGAETFFADQGVSWASLGVSDRLTRALSTIGIERPSLVQAACIPYILSGNDVVVAAETGSGKTHGYLVPLIDKLCGTPNDSVDASTDQESRHLHQLCLVLCPNVMLCEQVVQMANCLCGDNGEPLLRVVAVCGRQGWPVKEPDIIVSTPAAFLNNLNAIDPEKQRRSNFLRGVKCVVFDEADMLLCGSFQNQVIRLIDMLRFDEKILSRIKKSVPDKQMELESDSMLHFYSESEKDEEETEEQTEIISDEEENVVGEPVVEGFTEEIEVGSIKKKDWRRVRKNYERSKQYIFVAATLPVNGKKTAGGVLKRMFPDAHWVSGGYLHCHNPRLEQKWIEVTVDTQVDALIDAVKQGFRSKVLDSGVGVSRTMVFANTVEAVEAISKILHRAGVECFRYHRDSSLEERAKTLVDFQQKGGVLVCTDSAARGLDIPNISHVIQADFATSALDFLHRVGRTARAGQFGLVTSLYTESNRDLVAAIRQADKLGQPVDAAFSRKRSFRNKLKKRGTNKLGDVEERVLA* 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9410541 9423702 - Vvi1g772 Vvi1g772 769972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g772 593 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 115 387 IPR014001 -
Vvi1g772 593 SMART ultradead3 103 406 IPR014001 -
Vvi1g772 593 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 53 570 - -
Vvi1g772 593 Gene3D - 63 385 IPR027417 -
Vvi1g772 593 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 415 580 IPR001650 -
Vvi1g772 593 CDD SF2_C_DEAD 403 541 - -
Vvi1g772 593 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 22 53 570 - -
Vvi1g772 593 Gene3D - 404 592 IPR027417 -
Vvi1g772 593 CDD DEADc 95 279 - -
Vvi1g772 593 SMART helicmild6 452 532 IPR001650 -
Vvi1g772 593 Pfam DEAD/DEAH box helicase 110 274 IPR011545 GO:0003676|GO:0005524
Vvi1g772 593 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 84 112 IPR014014 GO:0003724
Vvi1g772 593 Pfam Helicase conserved C-terminal domain 439 532 IPR001650 -
Vvi1g772 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 544 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g772 - - - vvi:100253463 1108.2
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g772 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00863 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011112 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 31