Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g773 ATGGCGCCAAAGGCAAAGAAGAGTCGAGCACCCACTTCCGATCCAAATGGAATGTTCGCTGGAATGGTCGTTTTCTTGGTCGAGTATGGAGTCCAGACTCGTCGACTAGAGATTTGGAAGCAGAAACTGGTGCAAATGGGGGCTACTATTGCAGACCGTCTTTCGAAGAGGGTGTCTCATGTTTTTGCTGTGAATAGGGATGCCCTTCTCCGACAAGTTGGTCGTGAGCATTTGGAGCGCTTCCAAGGAAATGTGCTACAATACCAGTGGCTAGAGGATAGTTTGAGATTAGGAGAGAAGATATCTGAGGACTCATACAATCTAAAATTTGATTCAGAAGTACAAGATGGACCAGGAAACACTTCAGAAATTTTTCCTCAACCATCACAGTTAAACAATTCCCGTGAAGATGGAGCACCACAAAACAAAAGGATGAAATCCTCTCCAGAGAAAAATATGAATGAGGAAAGCAGGGAAAACAAAAGAAATAGCACTGCACATGAGACATCTGATACTGTCCAAGGTTCTGATGAATCATTCCGCACTCCAAGCCCAGAAAATTCTGGTTCAAATACCCTTGCTGAATACTTTACTATATCTTTTAATCAGGTGGGCACATTGGACTCATCCTTGCCATATAGTCCTCCTGACTTGAACAAGAATATCACTGAGATATTTGGGAAGCTTATTAACATATACAGAGCGCTGGGTGATGACAGGAGATCATTTAGCTATCACAAGGCTATAGGAGTTATCGAAAAGTTGCCTTTTAAAATTGAAAGTGCAGACCAGGTCAAGGACCTGCCTACAATTGGAAAATCAATGCAGGATCATATTCAAGAGATAGTGACTACCGGAAAGTTATCGAAGTTAGAGCACTTTGAGACAGATGAAAAGGTACGAACAATAAATTTATTTGGGGAAGTATGGGGTATTGGTCCGGCCACTGCACTGAAACTATATGAGAAAGGATACCGTACGCTAGATGATCTGAAGAATGAGGATTCACTAACAAACGCACAGAAGTTAGGGTTGAAATATTTTGATGATATCAAGAAGAGGGTTCCACGCCATGAGGTCCAAGAGATGGAACTTCTTTTGCAGAAAGCTGGAGAAGAGGTTTTGCCTGGGGTGTCTATTGTATGTGGAGGATCCTATAGACGAGGAAAAGCTTCCTGTGGAGATTTGGATATTATAATTACACATCCTGATGGAAAAAGTCACAGAGGATTTTTACCAAGATATGTAAAGCACTTGAAGGATATGAAGTTTTTACGAGAAGATTTGATATTCAGTACTCACAGTGAAGAGGGTACTGATTCAGGTGTTGACACTTATTTTGGTCTTTGCACATATCCTGCTCGAGAACTGCGACATCGCATAGATTTGAAGGTATACCCGAGAAACATCTATGCATTTGGACTAATAGCTTGGACTGGGAATGATGTATTAAATAGGAGGTTAAGAATACTCGCAGAATCCAAAGGATACCGGCTTGACGATACAGGGCTGTTTCTGGCTACTCAGGGTTCAGGTGGTAAACGGGGATCAAGAGCTACTACAAGTTTAAGTTTTAGGACGGAACAAGAAGTGTTTGAGTTCCTGGGATTCCCTTGGCTTGAACCACATGAAAGAAATCTGTGA 1644 41.85 MAPKAKKSRAPTSDPNGMFAGMVVFLVEYGVQTRRLEIWKQKLVQMGATIADRLSKRVSHVFAVNRDALLRQVGREHLERFQGNVLQYQWLEDSLRLGEKISEDSYNLKFDSEVQDGPGNTSEIFPQPSQLNNSREDGAPQNKRMKSSPEKNMNEESRENKRNSTAHETSDTVQGSDESFRTPSPENSGSNTLAEYFTISFNQVGTLDSSLPYSPPDLNKNITEIFGKLINIYRALGDDRRSFSYHKAIGVIEKLPFKIESADQVKDLPTIGKSMQDHIQEIVTTGKLSKLEHFETDEKVRTINLFGEVWGIGPATALKLYEKGYRTLDDLKNEDSLTNAQKLGLKYFDDIKKRVPRHEVQEMELLLQKAGEEVLPGVSIVCGGSYRRGKASCGDLDIIITHPDGKSHRGFLPRYVKHLKDMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPARELRHRIDLKVYPRNIYAFGLIAWTGNDVLNRRLRILAESKGYRLDDTGLFLATQGSGGKRGSRATTSLSFRTEQEVFEFLGFPWLEPHERNL* 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9424058 9437701 + Vvi1g773 Vvi1g773 769973

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g773 547 MobiDBLite consensus disorder prediction 110 191 - -
Vvi1g773 547 Gene3D - 293 352 - -
Vvi1g773 547 Gene3D - 209 292 IPR027421 -
Vvi1g773 547 PRINTS DNA-polymerase family X signature 311 328 IPR022312 GO:0003677|GO:0003887|GO:0006281
Vvi1g773 547 PRINTS DNA-polymerase family X signature 381 395 IPR022312 GO:0003677|GO:0003887|GO:0006281
Vvi1g773 547 PRINTS DNA-polymerase family X signature 395 403 IPR022312 GO:0003677|GO:0003887|GO:0006281
Vvi1g773 547 PRINTS DNA-polymerase family X signature 460 469 IPR022312 GO:0003677|GO:0003887|GO:0006281
Vvi1g773 547 PRINTS DNA-polymerase family X signature 476 489 IPR022312 GO:0003677|GO:0003887|GO:0006281
Vvi1g773 547 PRINTS DNA-polymerase family X signature 527 545 IPR022312 GO:0003677|GO:0003887|GO:0006281
Vvi1g773 547 SUPERFAMILY PsbU/PolX domain-like 297 352 - -
Vvi1g773 547 SUPERFAMILY BRCT domain 14 109 IPR036420 -
Vvi1g773 547 CDD NT_POLXc 220 545 IPR002054 GO:0003677|GO:0003887
Vvi1g773 547 SMART polxneu3 217 546 IPR002054 GO:0003677|GO:0003887
Vvi1g773 547 MobiDBLite consensus disorder prediction 167 191 - -
Vvi1g773 547 MobiDBLite consensus disorder prediction 139 166 - -
Vvi1g773 547 PRINTS DNA-polymerase family X pol beta-like signature 270 287 IPR002008 GO:0003677|GO:0006281
Vvi1g773 547 PRINTS DNA-polymerase family X pol beta-like signature 342 356 IPR002008 GO:0003677|GO:0006281
Vvi1g773 547 PRINTS DNA-polymerase family X pol beta-like signature 382 401 IPR002008 GO:0003677|GO:0006281
Vvi1g773 547 PRINTS DNA-polymerase family X pol beta-like signature 459 467 IPR002008 GO:0003677|GO:0006281
Vvi1g773 547 PRINTS DNA-polymerase family X pol beta-like signature 474 481 IPR002008 GO:0003677|GO:0006281
Vvi1g773 547 PRINTS DNA-polymerase family X pol beta-like signature 528 545 IPR002008 GO:0003677|GO:0006281
Vvi1g773 547 PANTHER DNA POLYMERASE TYPE-X FAMILY MEMBER 18 546 IPR022312 GO:0003677|GO:0003887|GO:0006281
Vvi1g773 547 MobiDBLite consensus disorder prediction 114 138 - -
Vvi1g773 547 Pfam DNA polymerase beta thumb 475 546 IPR029398 -
Vvi1g773 547 SUPERFAMILY DNA polymerase beta, N-terminal domain-like 213 294 IPR027421 -
Vvi1g773 547 ProSitePatterns DNA polymerase family X signature. 384 403 IPR019843 GO:0016779
Vvi1g773 547 Gene3D DNA polymerase, thumb domain 477 545 IPR037160 -
Vvi1g773 547 SUPERFAMILY Nucleotidyltransferase 354 546 IPR043519 -
Vvi1g773 547 Gene3D Beta Polymerase, domain 2 354 476 IPR043519 -
Vvi1g773 547 Pfam Helix-hairpin-helix domain 219 284 IPR010996 -
Vvi1g773 547 Pfam DNA polymerase beta palm 354 467 IPR028207 -
Vvi1g773 547 Gene3D BRCT domain 10 110 IPR036420 -
Vvi1g773 547 PANTHER DNA POLYMERASE IV 18 546 - -
Vvi1g773 547 Pfam Fingers domain of DNA polymerase lambda 304 351 IPR018944 GO:0003677|GO:0034061
Vvi1g773 547 ProSiteProfiles BRCT domain profile. 14 108 IPR001357 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g773 K03512 POLL; DNA polymerase lambda [EC:2.7.7.7 4.2.99.-] - vvi:100248348 1074.69
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g773 . . . . . Bpe10g00824 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010075 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 33