Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g776 ATGTGGTGTTTTATTTTTAATTATTATTCATATTTGTTCCATTATTTTTTAAAACAGTTACCCAAGAGCACAACCCAGTCCCCCTCTCTCCTTTCCCTCTCTCTAGCCGGGGCTGCGCTCAGTAAACGGCTCCTCTTCTGCCCACGGCTTCTTCGGAAATCTGGACCACTCGGGCAAAACTACTCTGTAATGAACTGCCTGCCGCATGTCTCTTCCTACTATTCGGCCATACTTTCAAAAACCAGTCGTTTCATTGCTAAGAGCTCTTTATATGGATGTTCTACCTCATCATGGAAAATTAACTTCGAGAATGCTAATGTTAAAACAAATAATTTAGAGTTGATGTTGACGAGATTTCGTGTTCAGAGCTATTCATCTCGGGGGCGTGGAGCCAAATCGCAATCTCAAAAGTTAGAGTCTAAACCTGTGATGGAAGAAGAGAAGGATGCATTTTTTGTGGTTCGGAAAGGGGATGTTGTTGGTGTTTACAAGACTTTCAGTGATTGCCAAGCTCAAGTTGGATCTTCTATATGCGATCCGCCTGTTAGTGTATACAAAGGATATTATTTACCTAAGGACACTGAAGAATATTTGGTATCCCGTGGTCTTAGGAATGCTCTTTACACCATCAGAGCTGCAGATTTGAAAGAGGATCTTTTCGGAAAACTCATGCCTTGTGCTTTTCAGCAAACAGCTTCTTCCAAAGGTGAAATATTGAGCAAGGATCTACCAAGAGAGAGTTCACAAGAAGTGATGGGATTAGAAATAGTGGGAGCAGTTGAATCAAGACCTATTACAACTGATCCATTGAAAGAGCATATCAAATTAGATCGTGTTGAGGCTCAGGCACTATTTTCTGATTGTCGTTCCTGTGTTGTTGAGTTTGATGGTGCTTCAAAAGGGAATCCTGGACCAGCTGGTGCAGCAGCTGTGCTGCGATCTGACAGTGGAAGAGTGATCTGTAGAGTGCGTGAAGGTTTGGGCTTAGCAACAAATAATGTAGCTGAATATCAAGCTATGATTTTAGGGTTGAAATATGCTCTTAAAAAAGGTTATACAAGCATTCGTGTACAAGGAGATTCCAAACTTGTCTGTATGCAGGTTCAGGGTCTCTGGAAGGCAAGAAACAAGAACATGTCTATCTTGTGTAAGGAGGCTAAAAAACTGAAGAATGAGTTCCTTTCGGTCGAGATCAATCATGTTCTAAGGGGATTAAACTCTGAGGCCGATGCTCAAGCAAACTTGGCCGTCCATCTTGCTGTCGGTGAAGTTCAGGAGGTACATGGCCTTGTTTTCGTGGATCAAAATCTGAAGGGTGTGTATGTCTACAATGCTTAG 1338 42.08 MWCFIFNYYSYLFHYFLKQLPKSTTQSPSLLSLSLAGAALSKRLLFCPRLLRKSGPLGQNYSVMNCLPHVSSYYSAILSKTSRFIAKSSLYGCSTSSWKINFENANVKTNNLELMLTRFRVQSYSSRGRGAKSQSQKLESKPVMEEEKDAFFVVRKGDVVGVYKTFSDCQAQVGSSICDPPVSVYKGYYLPKDTEEYLVSRGLRNALYTIRAADLKEDLFGKLMPCAFQQTASSKGEILSKDLPRESSQEVMGLEIVGAVESRPITTDPLKEHIKLDRVEAQALFSDCRSCVVEFDGASKGNPGPAGAAAVLRSDSGRVICRVREGLGLATNNVAEYQAMILGLKYALKKGYTSIRVQGDSKLVCMQVQGLWKARNKNMSILCKEAKKLKNEFLSVEINHVLRGLNSEADAQANLAVHLAVGEVQEVHGLVFVDQNLKGVYVYNA* 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9457363 9477097 - Vvi1g776 Vvi1g776 769976

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g776 445 Gene3D - 148 200 IPR037056 -
Vvi1g776 445 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 161 425 - -
Vvi1g776 445 Pfam Reverse transcriptase-like 295 416 IPR002156 GO:0003676|GO:0004523
Vvi1g776 445 ProSiteProfiles RNase H type-1 domain profile. 287 418 IPR002156 GO:0003676|GO:0004523
Vvi1g776 445 SUPERFAMILY Ribonuclease H-like 291 414 IPR012337 -
Vvi1g776 445 SUPERFAMILY L9 N-domain-like 150 198 IPR009027 -
Vvi1g776 445 Gene3D - 290 421 IPR036397 GO:0003676
Vvi1g776 445 CDD RNase_HI_like 291 418 - -
Vvi1g776 445 PANTHER PUTATIVE-RELATED 161 425 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g776 - - - vri:117916876 749.969
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g776 Vvi14g1404 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g776 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0643 Cone12ag0628 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001706 2 4 1 4 3 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 3 2 2 1 2 1 10 2 2 70