Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g778 ATGTTTCACTTGGAGTTATCCCATCGAGGCTGTCCGCGACTCTGCACATTGCACAACACCACTTCTTCTCTCCTATCCCAAAGCAAAACCCTCCAATCCTACCAAACCTACCAACCACTTCTCCCTTTTCTCTCAGTAAATGCATCTTCGACTGCTTCATTTCTCCCTTCAATTCATCGATTAAGAGAACCTCAATTGGGCTTTCGTGTTGTTCTTGGTCGAGAGCGAATTGGGTTTTGTGTTTCTGCTCGCAAGCGAAGAAACGGTGACGGTACCCCATTAGATGAGGATGGTATTGGTGATGATGGGGACGAGTCCGATGATGAAGATGCATTTATAGCTTTCCCTGATATGATGAGGTGGTATAATAACAAGCCAAGTGGATTTGGTGAAGGTAAAGTGTATGATACTCGTATTGAGGACAAGTTGCTGGAAGAAATAAAGCAGAGCAGAGTGGCTCAGCTGGCCAATATCGATAAGCTTAAGAAGAATCCTGTGAACCCCAATTCCGAGAAAGCTAACAATCAAGGACAGAAAGCACCTGAACCTGTTGCAAATGCATTTCGTGTACGTGTGGCGAACCTTCCTAAGAAAAAGAACATCCATAGAGATCTGCAGTTGGCTTTTAAAGGAGTTCCTGGTATAGTTAATATAATCCCTGCAGTCTCTGGAAATAAGAAGACTAGGGATCCTGTTTGCAAGGGCTTTGCTTTTGTTGATCTCAAGACTGAGAACGACGTAAATAGGTTTGTACATATGTTTTCCGAACAAAATATAACTTTTGGTAAGATTCGGAAGCAGATAAAATGTGAAATAACGAATTCAGGCTCTCCCAATGTTACTTATGAGCAATCAGCAGTTAGCACCTTCACTGATCCCCAATGTATGGGAGGAAACTGCCTCAGAGAAGTCTGA 915 42.95 MFHLELSHRGCPRLCTLHNTTSSLLSQSKTLQSYQTYQPLLPFLSVNASSTASFLPSIHRLREPQLGFRVVLGRERIGFCVSARKRRNGDGTPLDEDGIGDDGDESDDEDAFIAFPDMMRWYNNKPSGFGEGKVYDTRIEDKLLEEIKQSRVAQLANIDKLKKNPVNPNSEKANNQGQKAPEPVANAFRVRVANLPKKKNIHRDLQLAFKGVPGIVNIIPAVSGNKKTRDPVCKGFAFVDLKTENDVNRFVHMFSEQNITFGKIRKQIKCEITNSGSPNVTYEQSAVSTFTDPQCMGGNCLREV* 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9478447 9494585 - Vvi1g778 Vvi1g778 769978

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g778 304 CDD RRM_SF 190 265 - -
Vvi1g778 304 MobiDBLite consensus disorder prediction 161 180 - -
Vvi1g778 304 Coils Coil 144 164 - -
Vvi1g778 304 MobiDBLite consensus disorder prediction 163 180 - -
Vvi1g778 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 275 IPR000504 GO:0003723
Vvi1g778 304 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 294 - -
Vvi1g778 304 Gene3D - 166 277 IPR012677 -
Vvi1g778 304 SUPERFAMILY RNA-binding domain, RBD 174 274 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g778 - - - vvi:100250082 545.814
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g778 . . . Bda11g01252 Bpe13g01448 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01252 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008214 1 1 0 1 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 3 1 1 1 1 1 0 3 2 1 35