Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g78 ATGAAGAGTAAGGGTCTAAGGAAAGTCCCTGGCTACAGCACAATAGAGATTGACAAGAAAATTTATAGGTTTGGACCAGGCGATACATCTCATTCACAAACAAAGGACATATACAGATTCTTGGAAAATTTTCGGAGTTTGGTTCATGCTCAAGTTTATGATTCAGAACCTGATAATTCTATTGTTGGCACTAGTAAATTCAACAAAGAAAATAATGTTGTGAGTCACAGTGAGAAGTTGGCAATTGCCTTCGGAATAATCAACACCAGGCCAGGAACAACACTACGCATTTCTAAGAACCTTCGTGTTTGTAGAGATTGCCATTCCTTTGCAAAGATTGCGTCTAAAATCACAGGCAGAGAGATCATCATGAGAGATTTGAATCGGTTTCATTGTTTCAGGAATGGGAGTTGCTCTTGTAATGATTATTGGTGA 435 38.39 MKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVSHSEKLAIAFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW* 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 762705 763140 + Vvi1g78 Vvi1g78 769278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g78 144 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 138 - -
Vvi1g78 144 Pfam DYW family of nucleic acid deaminases 66 144 IPR032867 GO:0008270
Vvi1g78 144 PANTHER BNAC05G48160D PROTEIN 1 138 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g78 - - vvi:100260996 300.056