Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g786 ATGAAGAGGATAAGGAGGGAGATTCACGAGAACCCAGAGCTGGCATATGAGGAGTTCGCCACAAGCGCGGTCATTAGGCGTGAGCTTGAGGAGCTGGGTGTTGGGTATCGGTGGCCGGTAGCCAGGACTGGGGTTGTGGCCACCATTGGTTCAGGGTCTCCACCTTTTGTTGCTCTGAGGGCAGACATGGATGCTTTGCCTATTCAGGAAATGGTGGAATGGGAGCATAAGAGCAAAGTCGATGGAAAAATGCATGCCTGTGGACATGATGCACATGTAGCAATGCTCCTTGGTGCGGCAAAGATACTTCAAGAAATCCGAGATGAATTGCAGGGAACCGTCGTTCTTATATTTCAACCAGCGGAGGAACGTGGGGTAGGTGCAAAAGACATGATCCAGGAAGGGGTGCTTGAAAATATCGAGGCTATCTTTGGGATTCATACAGTGCATGGATATCCAACAGGCACTGTTGCTGCACGGTCCGGAGAGTTTCTAGCTGGGTGTGGAGGCTTCAGAGCAAAGATCAGTGGGAGAGGGGGTCATGCTGCAAGTCCGCAGCATTCTATTGATCCAATCTTGGCCGTTTCGACATCAGTGATTAGCTTGCAAAATATTGTTTCCAGGGAGATAGATCCTTTGGATTCTCAGGTGGTTTCTGTAGCCATGATCCATGGAGGAACTGCATTTAATGTCATTCCAGATGCAGCTACTATAACTGGAACTTTCAGAGCCTTCAGCAAGAAGAGCTTCTATGCCCTCAGGGAAAGGATAGAAGAGGTTGTCAAAGCACAAGCAGCAGTGCATCGGTGCTCAGCAGAAATTGACTTCGCAGGAATGGAACAGCCCACAATTCCTCCAACTATAAATGATGAGAGGATTTATGAACATGTAAGACAAGTCTCCATTGAAATAGTGGGTGAAGAAAACACAAAAAGATCTCCATCCTTCATGGGCAGTGAAGATTTTGCCTTTTACTTGGACAAAGTACCTGGATCCTTCCTTTTACATTTGCATATTCTTACCTTTCAAATTCAACCAAAAATTCGTCCTTCCATAATCTCAGCCATGGGAATTCTACAGCTCCTCCTCATCTTCTTCCTATTCCCCATTACCACCCCCTCCTTCTCTTGTTTGAACTTGCAGTATTCTCTGAATTCTCTCACATTACCACACCGAAATTCTTCATCTAAAGAGCACATAACTGGGCTGGCTAATGATCCAATTACAGTGAACTGGATGAAGAGGATACGGAGGGAGATTCATGAGAACCCTGAACTTGCATATGAGGAATTTGCCACAAGCGCGCTCATTAGGCGTGAGCTTGAGCAGCTGGGTATTGGGTATCGGTGGCCCATAGCCGGGACTGGGGTTGTGGCCACCATTGGTTCAGGGTCTCAACCTTTTGTTGCTCTGAGGTCAGATATGGATGCTTTGCCTATTCAGGAAATGGTGGAATGGGAGCATAAGAGCAAAGTAGACGGAAAAATGCACGCCTGTGGACATGATGCACATGTCGCAATGCTCCTTGGTGCGGCAAAAATACTTCAAGAAATCCGAGATGAATTGCCGGGAACTGTTGTTCTTATATTTCAACCAGCAGAGGAACGTGGTGTAGGTGCAAAAGCCATGATCCAAGAAGGAGCGCTTGAAAATGTGGAGGCTATCTTTGGGGTTCATGCAGTTATTGAGTATCCCACAGGCACTGTTGCTGCACGATCTGGAGAATTTCTAGCTGGGTGTGGAGGCTTCAGGGCAAAGATCAGTGGAAGAGGGGGTCATGCAGCAGTTCCACAACATTCTATTGATCCCATCTTGGCAGTTTCCACATCAGTAGTTAGTTTGCAAAATATTGTTTCCAGGGAGACAGATCCTTTGGATCATCAGGTGGTTTCTGTAGCCATGATCCATGGAGGGACTGCATTTAATGTCATTCCAGATGCAGCTACTATAACTGGAACTTTTAGAGCCTTCAGCAAGAAGAGCTTCTATGCACTCAGGGACAGAATAGAAGAGGTTATCAAAGCACAAGCAGCAGTGCATCGGTGCTCAGCTGAGATTGACTTCTCAGGAATGGAACTGCCCACAATTCCTCCAACTATAAATGATAGGAGGATTTATGAACATGCAAGAAAAGTCTCCAGTGAAATGGTAGGTGAAGAAAACACCAAAACATCTCCAGTCTGCATGGGCAGTGAAGATTTTGCTTTTTACTTGGACAAAGTACCTGGATCCTTCCTTTTTCTAGGCATGAGAAATGAGAAGGCAGGATCCACATATCCTCCACACAGCCCTTACTACGTCCTCGATGAGGAAGTGCTTCCCATTGGGGCTGCAATACATGCCGCATTTGCACTTTCTTACCTTTCAGATTCGAACAATAATTTTCACTTCCATGATGTAGGATTCCCCCTCTGTGTCATCTCCTTGATTTATAATGTTCTAGTTGACAACAGATTGTCTCTTGAGATGTTTTATATTGAGAGTCCTACATGA 2493 45.93 MKRIRREIHENPELAYEEFATSAVIRRELEELGVGYRWPVARTGVVATIGSGSPPFVALRADMDALPIQEMVEWEHKSKVDGKMHACGHDAHVAMLLGAAKILQEIRDELQGTVVLIFQPAEERGVGAKDMIQEGVLENIEAIFGIHTVHGYPTGTVAARSGEFLAGCGGFRAKISGRGGHAASPQHSIDPILAVSTSVISLQNIVSREIDPLDSQVVSVAMIHGGTAFNVIPDAATITGTFRAFSKKSFYALRERIEEVVKAQAAVHRCSAEIDFAGMEQPTIPPTINDERIYEHVRQVSIEIVGEENTKRSPSFMGSEDFAFYLDKVPGSFLLHLHILTFQIQPKIRPSIISAMGILQLLLIFFLFPITTPSFSCLNLQYSLNSLTLPHRNSSSKEHITGLANDPITVNWMKRIRREIHENPELAYEEFATSALIRRELEQLGIGYRWPIAGTGVVATIGSGSQPFVALRSDMDALPIQEMVEWEHKSKVDGKMHACGHDAHVAMLLGAAKILQEIRDELPGTVVLIFQPAEERGVGAKAMIQEGALENVEAIFGVHAVIEYPTGTVAARSGEFLAGCGGFRAKISGRGGHAAVPQHSIDPILAVSTSVVSLQNIVSRETDPLDHQVVSVAMIHGGTAFNVIPDAATITGTFRAFSKKSFYALRDRIEEVIKAQAAVHRCSAEIDFSGMELPTIPPTINDRRIYEHARKVSSEMVGEENTKTSPVCMGSEDFAFYLDKVPGSFLFLGMRNEKAGSTYPPHSPYYVLDEEVLPIGAAIHAAFALSYLSDSNNNFHFHDVGFPLCVISLIYNVLVDNRLSLEMFYIESPT* 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9674650 9688246 - Vvi1g786 Vvi1g786 769986

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g786 830 CDD M20_IAA_Hyd 413 788 IPR044757 GO:0009850|GO:0016787
Vvi1g786 830 Gene3D Zn peptidases 415 773 - -
Vvi1g786 830 Gene3D Zn peptidases 3 335 - -
Vvi1g786 830 SUPERFAMILY Zn-dependent exopeptidases 411 790 - -
Vvi1g786 830 Gene3D - 578 696 - -
Vvi1g786 830 Gene3D - 166 284 - -
Vvi1g786 830 CDD M20_IAA_Hyd 1 334 IPR044757 GO:0009850|GO:0016787
Vvi1g786 830 PANTHER IAA-AMINO ACID HYDROLASE ILR1-LIKE 2 1 335 - -
Vvi1g786 830 PANTHER IAA-AMINO ACID HYDROLASE ILR1-LIKE 2 361 811 - -
Vvi1g786 830 SUPERFAMILY Zn-dependent exopeptidases 2 336 - -
Vvi1g786 830 PANTHER PEPTIDASE M20 FAMILY MEMBER 1 335 IPR017439 GO:0016787
Vvi1g786 830 PANTHER PEPTIDASE M20 FAMILY MEMBER 361 811 IPR017439 GO:0016787
Vvi1g786 830 SUPERFAMILY Bacterial exopeptidase dimerisation domain 166 285 IPR036264 -
Vvi1g786 830 SUPERFAMILY Bacterial exopeptidase dimerisation domain 578 697 IPR036264 -
Vvi1g786 830 Pfam Peptidase dimerisation domain 579 678 IPR011650 -
Vvi1g786 830 Pfam Peptidase dimerisation domain 167 266 IPR011650 -
Vvi1g786 830 TIGRFAM amidohydrolases: amidohydrolase 2 335 IPR017439 GO:0016787
Vvi1g786 830 TIGRFAM amidohydrolases: amidohydrolase 414 776 IPR017439 GO:0016787
Vvi1g786 830 Pfam Peptidase family M20/M25/M40 470 784 IPR002933 GO:0016787
Vvi1g786 830 Pfam Peptidase family M20/M25/M40 58 332 IPR002933 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g786 K14664 ILR1; IAA-amino acid hydrolase [EC:3.5.1.-] - vvi:100263860 877.47
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g786 . . . . . . . . . . . . . . Sed06g1602 . . Bhi07g01672 Tan04g1177 Cmetu10g1745 Lac13g0238 Hepe10g1675 . . Cla05g02511 Cam05g2695 Cec05g2729 Cco05g2763 Clacu05g2698 Cmu05g2552 Cre05g2667 . . . . Lsi04g00510 Csa05g02371 Chy10g00935 Cme10g00490 . . Bda07g01569 . Bpe11g01737 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011718 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 30