Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g789 ATGGCAGAAGCCTCGAGGTCTCAAGTCACCATCACCCTTGGCTCTACTGGTCAGGTGGTAAAGAGGGCAGGACCTATGATGGATGGTGCATTTTTGGAATCTCCCCCGGCCACTGGAAGTAAGAGGTCTGTGAAGGATCGATTAGGGAGTAATGTGGATTCTTTGATGCATGAAAACCCACTCAACAATAAACGACAACGAGGAGATCGTAACAAATTACATTTGAGTTCTAATGGTGTTAATGGGAAGCGCATTGGTAAAGATGATCTCCGGTTCAAAATCATGGAAAAAAGCATGTCTTTCCGAGCTCAAACCAATGATCTGCTGAATGGCATGGACCTTCGTGAAAAGCTGTCAAGGACAGTTAAGCATGCAGAAACTAGTGTTGATATGCAGAAGCCCAGACCTGAGACAAAGGAGACTAACCCATGGGGTCAACTTCCTTCCAGAAGAAGTGCAGAAGATTCACCACAGATCAATTTGCCCAGAAATTCTTATTCTGCTTGGTCTTTGGATCAATTAAAGCAAAGATACCCAGATGGAATTTTTGGTTCTACTGGGAGTCTCTCCCCACAGATGAATGTTCCAAAACTACAGAAAAGGCCAATAATCCAGAAATATGACGATGTTAGATCAGCTCCATTTATAATCAATAATATTCTTGATCCTCCAAGACGTATGGGCACTACACCTTTTATGACAAAATCTACACTACCGACTGGCCATGCAAAACCTGTAGCACCAATGCAAGCCCACCTCCAACCATCAAGCAACATTGTACAGAAAAATTCATACTTAGGTGATGAACAGCCTACTGTTGACAGCTTGTTACATTCTCTGGGTCTGGGAAAATATGCCATTTATTTTAAGGCCGAGGAAGTGGACATGGCTGCACTGAAGCAGATGGGGGAGCATGACCTTAAAGAGTTGGGAATTCCAATGGGGCCTAGGAAGAAGATTCTTCTCGCTGTCTTGTCGTGTTCCAAGCAGCAATTGTGA 999 43.84 MAEASRSQVTITLGSTGQVVKRAGPMMDGAFLESPPATGSKRSVKDRLGSNVDSLMHENPLNNKRQRGDRNKLHLSSNGVNGKRIGKDDLRFKIMEKSMSFRAQTNDLLNGMDLREKLSRTVKHAETSVDMQKPRPETKETNPWGQLPSRRSAEDSPQINLPRNSYSAWSLDQLKQRYPDGIFGSTGSLSPQMNVPKLQKRPIIQKYDDVRSAPFIINNILDPPRRMGTTPFMTKSTLPTGHAKPVAPMQAHLQPSSNIVQKNSYLGDEQPTVDSLLHSLGLGKYAIYFKAEEVDMAALKQMGEHDLKELGIPMGPRKKILLAVLSCSKQQL* 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9730772 9735394 - Vvi1g789 Vvi1g789 769989

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g789 332 PANTHER PA-PL1 PHOSPHOLIPASE FAMILY 1 319 - -
Vvi1g789 332 ProSiteProfiles SAM domain profile. 268 331 IPR001660 GO:0005515
Vvi1g789 332 MobiDBLite consensus disorder prediction 122 137 - -
Vvi1g789 332 Gene3D - 270 332 IPR013761 -
Vvi1g789 332 PANTHER OSJNBA0060P14.15 PROTEIN 1 319 - -
Vvi1g789 332 MobiDBLite consensus disorder prediction 142 161 - -
Vvi1g789 332 SUPERFAMILY SAM/Pointed domain 271 326 IPR013761 -
Vvi1g789 332 Pfam SAM domain (Sterile alpha motif) 271 324 IPR001660 GO:0005515
Vvi1g789 332 MobiDBLite consensus disorder prediction 122 161 - -
Vvi1g789 332 MobiDBLite consensus disorder prediction 28 80 - -
Vvi1g789 332 SMART SAM_4 265 330 IPR001660 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g789 - - - vvi:100243328 659.448
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g789 Vvi14g1417 ECH
Vvi1g789 Vvi17g690 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g789 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0641 . . . . . . . Bda07g01570 . Bpe11g01738 . . . . Cmo04g02857 . . . . . Cpe13g00922 Cpe07g00639 . . . . . . . . . . . . . . . Csa05g01723 Chy09g00662 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004993 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 1 5 3 41