Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi1g79 | ATGTCAAAATGCTATGCAAAAGATGAGATCTTTAAAGGAGATGTAGGAAATCATATGAGCATAAGTATTATAGTGGAAATATATATTTTTTATAAAAAAAATGAAATAATTAACCCTCTTAGGCCTATAGAGAAAAGAACAATGAAACGTATCTCCCTCTTACACAGACACCTCCAATGGAGAAATCTCACCGTAACTGCCCTTCAACGGACTCCTGAAATTGATCGTACTATAGCTTCGATTCAGTCCATATCTTCAAACCCATGTTTTTCTCTTCTGGGTATCTGCAAAACCGTATCGTCTCTCAGGAAAATCCACGCTTTGCTCGTCGTCCACGGCCTGTCGGAGGACCTTTTATGCGAAACCAAATTGGTTAGCTTGTATGGTTCGTTTGGCCACGTTGAGTGTGCCCGATTAATGTTTGATAGAATTCGCAACCCGGATCTTTATTCGTGGAAGGTGATGATCAGATGGTATTTTTTGAACGATTCGTATTCGGAGATTGTTCAGTTTTACAACACCCGTTTGAGGAAATGCCTCAACGAGTATGACAATGTTGTTTTTTCGATTGTGTTGAAGGCGTGCAGTGAATTGCGTGAGACTGATGAAGGGAGGAAACTGCATTGCCAGATTGTTAAGGTGGGGAGTCCTGATAGTTTTGTGTTGACGGGTCTTGTGGATATGTATGCTAAATGTAGAGAGGTCGAGGATTCACGTCGAGTGTTTGATGAAATTCTTGATAGAAATGTGGTGTGTTGGACTTCCATGATTGTGGGGTATGTACAGAATGATTGCTTGAAAGAAGGGTTGGTGTTGTTTAATAGGATGAGGGAGGGGCTGGTGGAAGGTAACCAATATACTTTGGGGAGCTTAGTCACAGCCTGTACCAAGTTGGGAGCTTTACATCAGGGAAAGTGGGTTCATGGGTATGTGATTAAGAGTGGTTTTGATCTCAATTCTTTCTTGGTAACACCTCTTCTAGACTTGTATTTCAAGTGTGGGGACATTAGAGATGCTTTTTCTGTATTTGATGAGCTTTCTACTATTGATCTAGTTTCATGGACAGCCATGATTGTTGGGTATGCTCAGAGGGGCTACCCCCGAGAGGCTTTGAAGCTTTTTACAGATGAAAGATGGAAAGATCTCTTGCCAAATACTGTTACCACTTCGAGTGTGCTTTCTGCATGTGCACAAACTGGGTCTTTGAATATGGGTAGATCAGTTCATTGTCTTGGGATAAAACTTGGATCGGAAGATGCAACTTTTGAAAATGCTCTTGTGGACATGTATGCAAAATGCCACATGATTGGAGATGCTCGGTATGTATTCGAAACAGTTTTTGATAAGGATGTAATTGCTTGGAATTCAATCATTTCAGGGTACACTCAAAATGGGTATGCATATGAAGCCCTTGAACTTTTTGATCAAATGAGATCAGACTCTGTCTACCCAGATGCAATCACACTGGTCAGCGTCCTCTCAGCCTGTGCTTCTGTTGGTGCTTACAGAGTGGGTTCTTCTCTTCATGGATACGCTATAAAGGCTGGCCTATTATCAGGCAGGGATTGTAGCAGGTCCCTTGAACTTTTTGGTGATATGCTGAAGGAAAAGTTGGAGCCCAATGAAGTAATCTTCACCACTATATTATCGGCTTGTAGCCATTCAGGGATGCTTGGAGAAGGGTGGAGGTATTTCAATACAATGTGTCAGGTCTATAACTTTGTGCCTTCCATGAAGCATTATGCATGTATGGTTGATCTCTTGGCTCGTGCAGGAAGGCTTGAAGAAGCCTTGGATTTCATTGAGAAAATCCCAATTCAACCGGATGTTAGTTTGTTGGGAGCTTTTCTCCATGGATGCAGACTCCACTCGAGGTTTGATCTTGGAGAGGTGGCAGTTAGGAGGATGCTAGAGTTGCACCCTGATAAAGCTTGTTACTATGTTCTCATGTCAAATTTGTATGCATCAGAAGGAAGATGGAGCCAGGCTAATCAGGTGATGGAGTTGATGAAACAAAGAGGATTAGCAAAATTACCTGGGTGGAGCCTAGTGGATATTGAGACCAGTAATGATTTTTCTCCATTGATAGTTTTCTGTCCTGGTGGTTTTGCTGGTGTAAAATGA | 2124 | 41.85 | MSKCYAKDEIFKGDVGNHMSISIIVEIYIFYKKNEIINPLRPIEKRTMKRISLLHRHLQWRNLTVTALQRTPEIDRTIASIQSISSNPCFSLLGICKTVSSLRKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVGSPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGSEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGRDCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSMKHYACMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRRMLELHPDKACYYVLMSNLYASEGRWSQANQVMELMKQRGLAKLPGWSLVDIETSNDFSPLIVFCPGGFAGVK* | 708 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 763144 | 767420 | - | Vvi1g79 | Vvi1g79 | 769279 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi1g79 | 707 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 218 | 252 | IPR002885 | - | |
| Vvi1g79 | 707 | TIGRFAM | PPR: pentatricopeptide repeat domain | 251 | 278 | IPR002885 | - | |
| Vvi1g79 | 707 | TIGRFAM | PPR: pentatricopeptide repeat domain | 543 | 577 | IPR002885 | - | |
| Vvi1g79 | 707 | TIGRFAM | PPR: pentatricopeptide repeat domain | 453 | 486 | IPR002885 | - | |
| Vvi1g79 | 707 | Gene3D | Tetratricopeptide repeat domain | 418 | 506 | IPR011990 | GO:0005515 | |
| Vvi1g79 | 707 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL | 95 | 519 | - | - | |
| Vvi1g79 | 707 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL | 522 | 696 | - | - | |
| Vvi1g79 | 707 | Gene3D | Tetratricopeptide repeat domain | 507 | 646 | IPR011990 | GO:0005515 | |
| Vvi1g79 | 707 | Gene3D | Tetratricopeptide repeat domain | 163 | 302 | IPR011990 | GO:0005515 | |
| Vvi1g79 | 707 | PANTHER | OS07G0578800 PROTEIN-RELATED | 522 | 696 | IPR045215 | GO:0003723|GO:0009451 | |
| Vvi1g79 | 707 | PANTHER | OS07G0578800 PROTEIN-RELATED | 95 | 519 | IPR045215 | GO:0003723|GO:0009451 | |
| Vvi1g79 | 707 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 350 | 384 | IPR002885 | - | |
| Vvi1g79 | 707 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 450 | 484 | IPR002885 | - | |
| Vvi1g79 | 707 | Pfam | PPR repeat family | 449 | 497 | IPR002885 | - | |
| Vvi1g79 | 707 | Pfam | PPR repeat | 543 | 569 | IPR002885 | - | |
| Vvi1g79 | 707 | Pfam | PPR repeat | 352 | 374 | IPR002885 | - | |
| Vvi1g79 | 707 | Pfam | PPR repeat | 223 | 250 | IPR002885 | - | |
| Vvi1g79 | 707 | Pfam | PPR repeat | 251 | 278 | IPR002885 | - | |
| Vvi1g79 | 707 | Pfam | PPR repeat | 326 | 346 | IPR002885 | - | |
| Vvi1g79 | 707 | Pfam | PPR repeat | 581 | 603 | IPR002885 | - | |
| Vvi1g79 | 707 | Pfam | E motif | 623 | 684 | IPR046848 | - | |
| Vvi1g79 | 707 | SUPERFAMILY | TPR-like | 185 | 668 | IPR011990 | GO:0005515 | |
| Vvi1g79 | 707 | Gene3D | Tetratricopeptide repeat domain | 303 | 417 | IPR011990 | GO:0005515 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi1g79 | - | - | vvi:100255915 | 1288.48 |