Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g79 ATGTCAAAATGCTATGCAAAAGATGAGATCTTTAAAGGAGATGTAGGAAATCATATGAGCATAAGTATTATAGTGGAAATATATATTTTTTATAAAAAAAATGAAATAATTAACCCTCTTAGGCCTATAGAGAAAAGAACAATGAAACGTATCTCCCTCTTACACAGACACCTCCAATGGAGAAATCTCACCGTAACTGCCCTTCAACGGACTCCTGAAATTGATCGTACTATAGCTTCGATTCAGTCCATATCTTCAAACCCATGTTTTTCTCTTCTGGGTATCTGCAAAACCGTATCGTCTCTCAGGAAAATCCACGCTTTGCTCGTCGTCCACGGCCTGTCGGAGGACCTTTTATGCGAAACCAAATTGGTTAGCTTGTATGGTTCGTTTGGCCACGTTGAGTGTGCCCGATTAATGTTTGATAGAATTCGCAACCCGGATCTTTATTCGTGGAAGGTGATGATCAGATGGTATTTTTTGAACGATTCGTATTCGGAGATTGTTCAGTTTTACAACACCCGTTTGAGGAAATGCCTCAACGAGTATGACAATGTTGTTTTTTCGATTGTGTTGAAGGCGTGCAGTGAATTGCGTGAGACTGATGAAGGGAGGAAACTGCATTGCCAGATTGTTAAGGTGGGGAGTCCTGATAGTTTTGTGTTGACGGGTCTTGTGGATATGTATGCTAAATGTAGAGAGGTCGAGGATTCACGTCGAGTGTTTGATGAAATTCTTGATAGAAATGTGGTGTGTTGGACTTCCATGATTGTGGGGTATGTACAGAATGATTGCTTGAAAGAAGGGTTGGTGTTGTTTAATAGGATGAGGGAGGGGCTGGTGGAAGGTAACCAATATACTTTGGGGAGCTTAGTCACAGCCTGTACCAAGTTGGGAGCTTTACATCAGGGAAAGTGGGTTCATGGGTATGTGATTAAGAGTGGTTTTGATCTCAATTCTTTCTTGGTAACACCTCTTCTAGACTTGTATTTCAAGTGTGGGGACATTAGAGATGCTTTTTCTGTATTTGATGAGCTTTCTACTATTGATCTAGTTTCATGGACAGCCATGATTGTTGGGTATGCTCAGAGGGGCTACCCCCGAGAGGCTTTGAAGCTTTTTACAGATGAAAGATGGAAAGATCTCTTGCCAAATACTGTTACCACTTCGAGTGTGCTTTCTGCATGTGCACAAACTGGGTCTTTGAATATGGGTAGATCAGTTCATTGTCTTGGGATAAAACTTGGATCGGAAGATGCAACTTTTGAAAATGCTCTTGTGGACATGTATGCAAAATGCCACATGATTGGAGATGCTCGGTATGTATTCGAAACAGTTTTTGATAAGGATGTAATTGCTTGGAATTCAATCATTTCAGGGTACACTCAAAATGGGTATGCATATGAAGCCCTTGAACTTTTTGATCAAATGAGATCAGACTCTGTCTACCCAGATGCAATCACACTGGTCAGCGTCCTCTCAGCCTGTGCTTCTGTTGGTGCTTACAGAGTGGGTTCTTCTCTTCATGGATACGCTATAAAGGCTGGCCTATTATCAGGCAGGGATTGTAGCAGGTCCCTTGAACTTTTTGGTGATATGCTGAAGGAAAAGTTGGAGCCCAATGAAGTAATCTTCACCACTATATTATCGGCTTGTAGCCATTCAGGGATGCTTGGAGAAGGGTGGAGGTATTTCAATACAATGTGTCAGGTCTATAACTTTGTGCCTTCCATGAAGCATTATGCATGTATGGTTGATCTCTTGGCTCGTGCAGGAAGGCTTGAAGAAGCCTTGGATTTCATTGAGAAAATCCCAATTCAACCGGATGTTAGTTTGTTGGGAGCTTTTCTCCATGGATGCAGACTCCACTCGAGGTTTGATCTTGGAGAGGTGGCAGTTAGGAGGATGCTAGAGTTGCACCCTGATAAAGCTTGTTACTATGTTCTCATGTCAAATTTGTATGCATCAGAAGGAAGATGGAGCCAGGCTAATCAGGTGATGGAGTTGATGAAACAAAGAGGATTAGCAAAATTACCTGGGTGGAGCCTAGTGGATATTGAGACCAGTAATGATTTTTCTCCATTGATAGTTTTCTGTCCTGGTGGTTTTGCTGGTGTAAAATGA 2124 41.85 MSKCYAKDEIFKGDVGNHMSISIIVEIYIFYKKNEIINPLRPIEKRTMKRISLLHRHLQWRNLTVTALQRTPEIDRTIASIQSISSNPCFSLLGICKTVSSLRKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVGSPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGSEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGRDCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSMKHYACMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRRMLELHPDKACYYVLMSNLYASEGRWSQANQVMELMKQRGLAKLPGWSLVDIETSNDFSPLIVFCPGGFAGVK* 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 763144 767420 - Vvi1g79 Vvi1g79 769279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g79 707 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Vvi1g79 707 TIGRFAM PPR: pentatricopeptide repeat domain 251 278 IPR002885 -
Vvi1g79 707 TIGRFAM PPR: pentatricopeptide repeat domain 543 577 IPR002885 -
Vvi1g79 707 TIGRFAM PPR: pentatricopeptide repeat domain 453 486 IPR002885 -
Vvi1g79 707 Gene3D Tetratricopeptide repeat domain 418 506 IPR011990 GO:0005515
Vvi1g79 707 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 95 519 - -
Vvi1g79 707 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 522 696 - -
Vvi1g79 707 Gene3D Tetratricopeptide repeat domain 507 646 IPR011990 GO:0005515
Vvi1g79 707 Gene3D Tetratricopeptide repeat domain 163 302 IPR011990 GO:0005515
Vvi1g79 707 PANTHER OS07G0578800 PROTEIN-RELATED 522 696 IPR045215 GO:0003723|GO:0009451
Vvi1g79 707 PANTHER OS07G0578800 PROTEIN-RELATED 95 519 IPR045215 GO:0003723|GO:0009451
Vvi1g79 707 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Vvi1g79 707 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 450 484 IPR002885 -
Vvi1g79 707 Pfam PPR repeat family 449 497 IPR002885 -
Vvi1g79 707 Pfam PPR repeat 543 569 IPR002885 -
Vvi1g79 707 Pfam PPR repeat 352 374 IPR002885 -
Vvi1g79 707 Pfam PPR repeat 223 250 IPR002885 -
Vvi1g79 707 Pfam PPR repeat 251 278 IPR002885 -
Vvi1g79 707 Pfam PPR repeat 326 346 IPR002885 -
Vvi1g79 707 Pfam PPR repeat 581 603 IPR002885 -
Vvi1g79 707 Pfam E motif 623 684 IPR046848 -
Vvi1g79 707 SUPERFAMILY TPR-like 185 668 IPR011990 GO:0005515
Vvi1g79 707 Gene3D Tetratricopeptide repeat domain 303 417 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g79 - - - vvi:100255915 1288.48
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g79 . . . . . Bpe10g00892 . Bma15g00138 . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0919 . . . . . . Blo06g00922 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010395 1 1 1 1 1 1 1 1 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 29