Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g791 ATGCTTTCATCACACAAACAAACGAACATGAGATTTCATGTTCTCTGTGCTGCAATTTTTCTTCCACTTCTCACGACATCAGTCTCTGCGCGTTTCTTCCCAAATGCACCATCTATGCCTCCGTCGTCACCGCCCAACGCCACCACGAGCGGCTGGGATGCATTCAAGAAGTTCGCTGGGTGTCATGCTGGAGATAAAGCCGACGGCTTAGCCAAGCTCAAAGAGTACTTCCACTACTTTGGCTACATCCACAATTCCAACTACACTGATGACTTCGACGATGCTTTTGAACAGGCTCTCAAGACTTATCAACTCAATTTCAATCTCAATACCACGGGACAACTCGACGAAGCCACCCTAAATCAGATTGTGAGTCCCAGATGCGGCAATGCTGACATAGAAAACGGCTCCAGTTCCATGAATTCCGGTAAATCCACGCCCGCATTTGAGCGGTGGGCGGCAGTAACGCCCTTGACTTTCACGGAAAGTGATTCGTATTACTCCGCCGATCTCAGGATTGCATTCTACACCGGAGACCACGGCGACGGAGAGGCTTTCGACGGAGAGAATTGGGTAGCTACAGGCGACGTCACAACATCGTCTATATCTTCGGCGATCGACCTGGAATCCGTGGCGGTTCACGAGATTGGGCATCTGCTTGGGTTAGGGCACTCGTCGGTAGAAGAAGCGATCATGTACCCAACGATCACCTCACGGACAAAGAAGGTGGAGCTTGCTAGTGATGACATTCAGGGGATTCAGGAATTGTACGGCAGTAATCCCAATTACAATGGTTCCTCTACGTCGCCGTCTCAGGAGAGCGAAACCACTAATAATAGCGGGGCCTACACTGCAGCTCCACGGTGGAGTTTTGGGATCCTTTTGGCCGTTGGATTTGGTTTGTTGATGTTAAGCAATTCCGACGATGATGCTGCTTATCTTATTTACAGTGGTAGTTTGGATTGTGAAATTAAAGTCTGGCAATTAAGGATTCAGTGTGTTTGA 1005 48.96 MLSSHKQTNMRFHVLCAAIFLPLLTTSVSARFFPNAPSMPPSSPPNATTSGWDAFKKFAGCHAGDKADGLAKLKEYFHYFGYIHNSNYTDDFDDAFEQALKTYQLNFNLNTTGQLDEATLNQIVSPRCGNADIENGSSSMNSGKSTPAFERWAAVTPLTFTESDSYYSADLRIAFYTGDHGDGEAFDGENWVATGDVTTSSISSAIDLESVAVHEIGHLLGLGHSSVEEAIMYPTITSRTKKVELASDDIQGIQELYGSNPNYNGSSTSPSQESETTNNSGAYTAAPRWSFGILLAVGFGLLMLSNSDDDAAYLIYSGSLDCEIKVWQLRIQCV* 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9772921 9786128 - Vvi1g791 Vvi1g791 769991

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g791 334 CDD ZnMc_MMP 148 258 IPR033739 GO:0008237|GO:0008270
Vvi1g791 334 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 144 261 - -
Vvi1g791 334 PANTHER MATRIX METALLOPROTEINASE 189 283 - -
Vvi1g791 334 PANTHER MATRIX METALLOPROTEINASE 148 189 - -
Vvi1g791 334 PANTHER MATRIX METALLOPROTEINASE 42 146 - -
Vvi1g791 334 Gene3D Collagenase (Catalytic Domain) 61 264 IPR024079 GO:0008237
Vvi1g791 334 Pfam Putative peptidoglycan binding domain 70 122 IPR002477 -
Vvi1g791 334 Pfam Matrixin 199 258 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Vvi1g791 334 Pfam Matrixin 146 192 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Vvi1g791 334 SMART col_5 99 259 IPR006026 GO:0006508|GO:0008237|GO:0008270
Vvi1g791 334 SUPERFAMILY PGBD-like 60 133 IPR036365 -
Vvi1g791 334 PANTHER MATRIX METALLOPROTEINASE 42 146 - -
Vvi1g791 334 PANTHER MATRIX METALLOPROTEINASE 189 283 - -
Vvi1g791 334 PANTHER MATRIX METALLOPROTEINASE 148 189 - -
Vvi1g791 334 MobiDBLite consensus disorder prediction 258 280 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g791 - - - vvi:100255347 555.058
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g791 Vvi14g1422 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g791 . . Bda01g02239 Bda11g01250 Bpe13g00477 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0625 . . . . . . . Bda11g01250 . . Bma01g00069 Bma06g00637 . Cmo04g02859 . . . . . Cpe13g00923 . . . . . . . . . . . . . . . . Csa05g01725 Chy09g00664 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006919 2 1 0 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 1 36