Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g793 ATGGAGTGTGCCGGAAGGGGAACGGGAAGGAGGTGCATTGGGCCCGCCACAAGACGCTGTGGTCGCTGCGGAGCCGTTGCTTATTGTTCCGTTTCTCACCAGGTTTCACACTGGAGTGATCATAAAGAAGAGTGTGGGAGGTTAGAGCAACAGATGAAGCTTGTGGATGTCTTAAATGATTTCCCCTTCACGTTCACTCCGGAGGCCACAATTCGGATTGTTGAGAAGCAGGAGAGTAGGTGTTCCTTCCTGAGCAACAGGGGTCTTCATCGGGTGGGAATGTGGATGTGTGAATGTCCTTGCGGCGATTCCCTTGTTTCTCTTGAGCATTCAAGGTTAAGTGATTGCTGGAATCTTTCAAGTACCTTGTGCCCATGTAGTGGGCCAGTATCTAGAATGTCAAAGTGTTTAACTAGTTGGAAGGACTATTATCAATGGAGGTGCATCCCTCTACATTCACCAGTTGCTTTGCTTCTTCACTGGCCACTTATGGTGTATCACGCTACTCAACTTGCTGCTATGAGAAACTTGAGTGCTGAAATCACTAATAAGTTGTGCATACATTATCTTGGGCCCGAGAAAGAGCTTCTTCAACTTGCTGTGTTTGGGGAGTTGCATGCACTTTTTCCCAGTGTGCAGGTGCATATAGAGTTAATTGGGCCTGCAATTCCAGAATCTAGGGATGGTGAGAGAGTTGATCTTTACACCTATGCTCATTGCATTGAGACAGATTGCATGTGCAAATCTTCAAGTGGGAATACCTGCTGGGATGTATGCTCTGGTAGAACTTCAGCAGTGACACTGAGGCTCCATAAAGGTTTTTATCATGAGCGGTTCCAAGATATAGTGAAGGATTCCATTCCTCATTTAGTCATTGCTCCAAATGCTGGAATTGCTGCCTATTCAAGTTGGTTACCAACCATTGAGTTGATAAAGGAACTAAATGTCCCAGCGGTTTTTTCTGATTACTGTGAAGAAGCTTCTCATCTGGCATCTTGTTGCATAAGCACCGTAACTGGCCACCCTATGACAATTCCTATTCAATTGAATCCATTCAGACAGCCAATGGTCATAGAAGATAGTGCTCTGTTTCTTCCATGTTACTCAAATTGCTTTCTATTTGGGATATGA 1131 45.0 MECAGRGTGRRCIGPATRRCGRCGAVAYCSVSHQVSHWSDHKEECGRLEQQMKLVDVLNDFPFTFTPEATIRIVEKQESRCSFLSNRGLHRVGMWMCECPCGDSLVSLEHSRLSDCWNLSSTLCPCSGPVSRMSKCLTSWKDYYQWRCIPLHSPVALLLHWPLMVYHATQLAAMRNLSAEITNKLCIHYLGPEKELLQLAVFGELHALFPSVQVHIELIGPAIPESRDGERVDLYTYAHCIETDCMCKSSSGNTCWDVCSGRTSAVTLRLHKGFYHERFQDIVKDSIPHLVIAPNAGIAAYSSWLPTIELIKELNVPAVFSDYCEEASHLASCCISTVTGHPMTIPIQLNPFRQPMVIEDSALFLPCYSNCFLFGI* 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9833701 9866988 - Vvi1g793 Vvi1g793 769993

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g793 376 PANTHER ZINC ION BINDING PROTEIN 1 376 - -
Vvi1g793 376 SUPERFAMILY HIT/MYND zinc finger-like 11 51 - -
Vvi1g793 376 Pfam MSS51 C-terminal domain 162 357 IPR046824 -
Vvi1g793 376 Gene3D - 3 52 - -
Vvi1g793 376 ProSiteProfiles Zinc finger MYND-type profile. 1 45 IPR002893 -
Vvi1g793 376 Pfam MYND finger 12 45 IPR002893 -
Vvi1g793 376 PANTHER ZINC ION BINDING PROTEIN 1 376 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g793 K24081 ZMYND15; zinc finger MYND domain-containing protein 15 - vvi:100251950 800.816
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g793 . . . . . . . . . . . . . . Sed04g0658 . . Bhi07g01669 Tan04g1170 Cmetu10g1060 Lac13g0240 Hepe10g1679 . . . . . . . . . . . . Cone12ag0622 . Csa05g02374 Chy10g00939 Cme10g00487 . . Bda07g01572 . Bpe11g01740 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014289 1 1 1 0 1 0 2 0 1 1 0 0 0 1 1 1 0 1 1 0 1 1 1 0 1 0 1 2 1 1 22