Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g795 ATGCTATTACTAAATTGCAGCATACATGAGGATTTGTCATTTTTTGCATACAAAAGCCCGGGAAATACCAAAATGAGAATGGGCCGCCCAAATAACTACTCCTGTTTGAAACTGTCAACAACCAAACCCCAAAAAGCACAAGACAAAACATCAACTAGAATTGCCCAAAATAAAGAAAAGAGCAACAGAGTCCGTTTTAATCCTCTCTGCAATTTTGTTGCCGGGTTGTTCTTCCTTCTGTTCCAAAGGTACACGGTTGCAAGGAGGAGAAGACAGAAAGATGGTAATGATCCACGAGGAGGTGGTGAACATGTGGTGCATCATACTGAGTTCTCAAGATTCAATGGAAATCTCAAGGGGCTGATTGTTGATGAGAATGGTTTGGACGTGCTTTATTGGAAGCAGCTTGAAGGGGGAAGCAGGAAGAATAGTTTCCGTAAAGAGGCTCTACATAATCTGAAAGATGAAGAAAAAAGGATGAGTCGGAATGGAGATCAGAGGGCAAAGCCTGAGCCTATACAAGAAATTCCTTTGCTACGAGGGAAGTCTTCAACTTCCTATGATGAAGTTCAAGAAGAAGTGGAAAATCTGAATCGGTTTTCAGCCCCCCCTCCTTTGTCACAATCTTTTGAGATTTCTCTTGAGGCTGCAGGTGGTTTTACTTCATCAACAAAAGAAGCATCATCGGTGCCCAAAGGGGTGCCTAATGGCAGTAAACTAGGAGAGTCTTCATCTGGATATAGCAAGGCAGGGACTGGAAATGGTCAGGTGGCGCTGAAGCCATTGCATTGGGATAAAGTGAACACTAACGCTAATCATTCAATGGTATGGCACAAAATTGATGGCGGTTCTTTCAGCTTCGATGGTGACCTCATGGAAGCACTGTTTGGATTTGTTGCTACTAATCGGAGATCTCCTCAAAGAAACCATAACAACCCAAATGGTGCCAGCTCAAGTCAATCGGCTCAGATTTTCATCCTTGATAGTCGAAAGTCCCAAAACACAGCAATTGTGCTCCGATCTTTAGCAATCTCGCGAAAAGAGATCCTCAACGCACTCATTGAGGGCCAAGACCTGAATGCAGATACTCTTGAAAAGCTTACAAAAATTGCCCCAACTAAAGAAGAAGAATCCCAAATCCTTGCATTCAAGGGAGACCCCACAAGACTGGCTGATGCTGAATCCTTCCTCTACCATATCCTAAAAGCTGTTCCATCAGCATTTGATCGTCTCAGTGCCATGTTTTTCAGATTGAATTATGACTCAGAGATTCTCCATCTCAGGGAATGTTTACAAACACTTGAATTGGGTTGCAAGGAGCTTCGAACTCGTGGACTTTTCTTAAAACTTTTGGAAGCCATACTCAAGGCAGGCAATCGCATGAATGCTGGAACTTCCAGAGGGAATGCCCAAGCTTTTAACCTTGCTGCTCTTCAAAAGCTTTCTGATGTTAAAAGCACTGATGGAAAAACTACGTTACTTCACTTTGTGGTGGAAGAAGTAGTCCGTTCTGAGGGAAAACGTTGTGTTTTGAACCGAAATCGCAGCTTGAGTCGCAGTAGCAGTCAGAGCAGCAGCAACAGTAGTCTGTATTCTGAGAACTCGACATCAAGAGAGGATAGAGAAAAGGAATACATAATGATTGGTTTACCAGTGGTAGGAGGCCTAAGTGCTGAATTCTCTAATGTAAAGAAAGCAGCTGTAATAGACTACAATGCCTTTGCTGGCGTATGTTCAACTCTCACAGCCCATTCCACTGAAATCAAGCAGTTTGTGGCACAATTTGCCAACAGTGATGGAGGATTTTTGAGGAAGATGAAAAGTTTTCTCAAAGCATCTGATGAAGAATTAAGGGAAGTGAGAGAAGAGCAAACAAGGGTAATGGAACTGGTAAGGAGAACAACAGAATATTATCAACCACGATCTTCAAAGAACAAAGAGGCAAGCCCGGTTCAATTATTTGTTATAGTAAAAAATTTCCTGGGTATGGTCGATCAGGTCTGTGTTGATATTGCTAGAAATCTACAACGGAGGAAAACAACCACAGCAAGTTTGGGGTCATCAACAAAGTCACCACCATCAAGAATTCCAGTGAAATTTCCAAACTTGCCGCCAAATTTCATGTCAGACAAGTCCAGGAACTCTTCTTCTAGTGATTCAGAAGATGAGTTCTGA 2175 42.48 MLLLNCSIHEDLSFFAYKSPGNTKMRMGRPNNYSCLKLSTTKPQKAQDKTSTRIAQNKEKSNRVRFNPLCNFVAGLFFLLFQRYTVARRRRQKDGNDPRGGGEHVVHHTEFSRFNGNLKGLIVDENGLDVLYWKQLEGGSRKNSFRKEALHNLKDEEKRMSRNGDQRAKPEPIQEIPLLRGKSSTSYDEVQEEVENLNRFSAPPPLSQSFEISLEAAGGFTSSTKEASSVPKGVPNGSKLGESSSGYSKAGTGNGQVALKPLHWDKVNTNANHSMVWHKIDGGSFSFDGDLMEALFGFVATNRRSPQRNHNNPNGASSSQSAQIFILDSRKSQNTAIVLRSLAISRKEILNALIEGQDLNADTLEKLTKIAPTKEEESQILAFKGDPTRLADAESFLYHILKAVPSAFDRLSAMFFRLNYDSEILHLRECLQTLELGCKELRTRGLFLKLLEAILKAGNRMNAGTSRGNAQAFNLAALQKLSDVKSTDGKTTLLHFVVEEVVRSEGKRCVLNRNRSLSRSSSQSSSNSSLYSENSTSREDREKEYIMIGLPVVGGLSAEFSNVKKAAVIDYNAFAGVCSTLTAHSTEIKQFVAQFANSDGGFLRKMKSFLKASDEELREVREEQTRVMELVRRTTEYYQPRSSKNKEASPVQLFVIVKNFLGMVDQVCVDIARNLQRRKTTTASLGSSTKSPPSRIPVKFPNLPPNFMSDKSRNSSSSDSEDEF* 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9877666 9880443 + Vvi1g795 Vvi1g795 769995

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g795 724 Pfam Formin Homology 2 Domain 256 664 IPR015425 -
Vvi1g795 724 MobiDBLite consensus disorder prediction 221 252 - -
Vvi1g795 724 SUPERFAMILY Formin homology 2 domain (FH2 domain) 262 679 - -
Vvi1g795 724 ProSiteProfiles Formin homology-2 (FH2) domain profile. 249 690 IPR015425 -
Vvi1g795 724 MobiDBLite consensus disorder prediction 679 695 - -
Vvi1g795 724 MobiDBLite consensus disorder prediction 238 252 - -
Vvi1g795 724 SMART it6_source 249 679 IPR015425 -
Vvi1g795 724 MobiDBLite consensus disorder prediction 679 724 - -
Vvi1g795 724 PANTHER FORMIN-LIKE PROTEIN 4 203 719 - -
Vvi1g795 724 PANTHER FORMIN-LIKE PROTEIN 4 37 202 - -
Vvi1g795 724 PANTHER FORMIN-RELATED 203 719 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vvi1g795 724 PANTHER FORMIN-RELATED 37 202 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vvi1g795 724 Gene3D Formin, FH2 domain 267 690 IPR042201 -
Vvi1g795 724 Coils Coil 603 623 - -
Vvi1g795 724 MobiDBLite consensus disorder prediction 514 534 - -
Vvi1g795 724 MobiDBLite consensus disorder prediction 514 537 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g795 - - - vvi:104879926 1160.98
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g795 Vvi14g1506 ECH
Vvi1g795 Vvi17g677 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g795 . . . . . Bpe10g00820 . Bma15g00202 Cmo04g01676 . . . . . Sed08g1729 . Cpe01g01416 Bhi07g01666 Tan04g1167 Cmetu03g1719 Lac13g0243 Hepe10g1681 . . Cla05g02507 Cam05g2691 Cec05g2724 Cco05g2759 Clacu05g2694 Cmu05g2548 Cre05g2663 . . Cone6ag0623 Cone9ag0638 Lsi04g00506 Csa05g02377 Chy10g00942 Cme10g00485 . . . . Bpe11g01744 . . . . . . Cma04g01601 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi7g937 . 412 832 FH2 protein (formin) Gene Family AT3G25500 64.9 9.2e-144 508.4
Vvi14g193 . 78 464 FH2 protein (formin) Gene Family AT3G25500 51.1 1.3e-102 371.7
Vvi7g937 . 397 844 FH2 protein (formin) Gene Family AT2G43800 55.6 5.4e-129 459.1
Vvi5g1358 . 92 643 FH2 protein (formin) Gene Family AT2G43800 51.7 6.6e-127 452.2
Vvi12g553 ECH 202 356 FH2 protein (formin) Gene Family AT4G15200 69.6 2.1e-55 213.8
Vvi19g414 ECH 34 173 FH2 protein (formin) Gene Family AT4G15200 71.1 1.5e-50 197.6
Vvi19g414 ECH 29 497 FH2 protein (formin) Gene Family AT5G54650 68.0 2.3e-175 613.2
Vvi12g553 ECH 210 626 FH2 protein (formin) Gene Family AT5G54650 60.4 6.4e-146 515.4
Vvi5g1358 . 390 649 FH2 protein (formin) Gene Family AT5G54650 58.5 2.2e-77 287.7
Vvi7g937 . 26 851 FH2 protein (formin) Gene Family AT5G67470 57.9 1.8e-228 789.6
Vvi14g193 . 80 452 FH2 protein (formin) Gene Family AT5G67470 50.8 3.1e-100 363.6
Vvi5g1358 . 384 647 FH2 protein (formin) Gene Family AT5G67470 70.5 2.0e-99 360.9
Vvi1g795 ECH 233 723 FH2 protein (formin) Gene Family AT1G59910 53.6 4.9e-133 472.6
Vvi14g1506 ECH 264 750 FH2 protein (formin) Gene Family AT1G59910 52.3 1.1e-127 454.9
Vvi17g677 ECH 415 870 FH2 protein (formin) Gene Family AT1G59910 52.4 7.4e-121 432.2
Vvi1g795 ECH 111 721 FH2 protein (formin) Gene Family AT1G70140 51.5 2.7e-161 566.2
Vvi17g677 ECH 412 868 FH2 protein (formin) Gene Family AT1G70140 55.5 9.3e-138 488.0
Vvi7g937 . 433 809 FH2 protein (formin) Gene Family AT5G48360 50.1 8.2e-89 325.5
Vvi14g193 . 66 467 FH2 protein (formin) Gene Family AT3G05470 67.3 4.8e-162 568.9
Vvi7g937 . 409 808 FH2 protein (formin) Gene Family AT3G05470 50.7 1.0e-103 375.2
Vvi5g1358 . 354 651 FH2 protein (formin) Gene Family AT3G05470 53.4 8.1e-77 285.8
Vvi2g901 . 1 1078 FH2 protein (formin) Gene Family AT1G31810 58.0 0.0e+00 1228.4
Vvi17g592 . 679 1000 FH2 protein (formin) Gene Family AT5G07650 75.2 4.3e-130 462.6
Vvi2g901 . 724 1054 FH2 protein (formin) Gene Family AT5G07650 61.0 1.5e-109 394.4
Vvi4g572 . 1246 1548 FH2 protein (formin) Gene Family AT5G07650 63.7 4.5e-103 372.9
Vvi11randomg8 . 663 947 FH2 protein (formin) Gene Family AT5G07650 60.0 9.8e-90 328.6
Vvi17g592 . 602 993 FH2 protein (formin) Gene Family AT5G07770 68.2 5.0e-139 491.9
Vvi2g901 . 659 1049 FH2 protein (formin) Gene Family AT5G07770 56.1 7.7e-116 414.8
Vvi4g572 . 1232 1541 FH2 protein (formin) Gene Family AT5G07770 61.3 1.1e-96 351.3
Vvi11randomg8 . 598 947 FH2 protein (formin) Gene Family AT5G07770 53.8 3.0e-91 333.2
Vvi17g592 . 602 1000 FH2 protein (formin) Gene Family AT3G32400 66.3 8.7e-145 510.8
Vvi2g901 . 659 1054 FH2 protein (formin) Gene Family AT3G32400 65.0 3.2e-139 492.3
Vvi4g572 . 1251 1548 FH2 protein (formin) Gene Family AT3G32400 78.5 2.2e-127 453.0
Vvi11randomg8 . 598 947 FH2 protein (formin) Gene Family AT3G32400 68.6 2.0e-125 446.4
Vvi17g592 . 603 1000 FH2 protein (formin) Gene Family AT5G07780 63.4 3.0e-123 439.1
Vvi2g901 . 660 1050 FH2 protein (formin) Gene Family AT5G07780 52.9 3.8e-102 369.0
Vvi4g572 . 1251 1548 FH2 protein (formin) Gene Family AT5G07780 61.5 2.2e-89 326.6
Vvi17g592 . 678 1007 FH2 protein (formin) Gene Family AT5G07760 73.2 8.4e-127 451.8
Vvi2g901 . 734 1050 FH2 protein (formin) Gene Family AT5G07760 62.9 3.0e-108 390.2
Vvi4g572 . 1251 1548 FH2 protein (formin) Gene Family AT5G07760 65.9 2.9e-103 373.6
Vvi11randomg8 . 662 947 FH2 protein (formin) Gene Family AT5G07760 60.8 1.3e-90 331.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007048 1 1 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 37