Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g796 ATGGGGGAATCAATAGTGGGGGCTCTAAAAGACGAAAACAAGATGGGGGAGTCGGCTGCTTCTGATGATGTTCTTGAAGCGTCAGTGTCGTTTGGTAGGTTTGAGAATGATTCATCTCTATCCTGGGAGAAATGGTCTTCATTCTCCCCGAACAAGTACTTGGAAGAAGTTGAGAAGTGTTCGACGCCTGGATCTGTAGCTCAGAAAAAGGCCTACTTTGAAGCCCATTACAAGAAGATTGCTGCTCGGAAGGCTGAGTTACTGGATCTGGAGAAGCAAATGGGAACGGACCCCTTGGGATCAGATGATCCTAATTGTGGAGATCAGATCAGAAATACTGATGGGAATAATACTGAGTTTGATGTATCTAATGGTCAGAGTTCTGCAGAAGGAGTTGACCAAGACACCAACTTGATCAGTGTGGTGACTACCACCCATGTGGATGAGCCCAGTGAGTCAAATGAGGGTGCTCCAATCACCATAGAATGCCAAAGCTCATCAGTTGAGGAGGCTGAAGAAGAGTTGGATAGCAAACAAGGTACCCCCAAATTGAAGGATGGGGAAGAAACTGTTTCGATAAAGGAAGAGGCTTCTCCAATGGGGTCTCAGAATGTAATGGAACTTCCCCCAAGCTTGGACAATGGGACAGGGAACACTCCAAGGATTAAGAAGGAAAGACCAAAATTGGATCCACCAAAGGAAACTAAAAAGATTACTTTGGCAAATAAGGAGAGGAAAACAGCATCAGTAATGAAGAAAGCAGTATCGCCTATAGCCAAGTCGCCACAAATTTCCAAACCTAGAGATTCAAAGCCAACACCAACTTCCAAAATGATATCTTCATCACAGCCATCAATAAAGAAGGCAAATGGATCATCTTTACCAAAGAACAAGAATCCTTCTGCAGGAGAAATCAAGAAACCATCTCCAAGGAGCAAGATTCCCTCTGCAGGGGAATGGAAGAAAGTAGCTCCTACTTCCCTGCACAAGTCCCTTAGTCTGGGTCCCCCACATTCTGATTCAGCATCCTTAACAACGACCAGAAAATCACTCATTATGGAGAAAATGGGGGATAAGGACATTGTTAGACGAGCCTTTAAGACATTTCAGAATAGTTTCAACCAATTGAAACCTTCTAGTGAAGTTAGATCTTCTGTACCAAAGCAGGTGTCTGCAAAGAGCACAGAACCAAGGGTTTCCACTTCTATAACTACACAAAGAGATAAGGAAAGGCCGCTCAAAGCTGGTGTTGTGGATCAAAAAAACACTAAGACTGCCCCAACTTTTGGCTTGAGAAGTAATGAAAGAGCAGAGAAACGGAAAGAGTTTTTCAAAAAATTGGAGGAAAAATCTAATGCTAAACAGACAGAGAAAACACGCCTTCAATCAAAATCAAAGGAGCAAAAGGAGGTAGAGATCAAAAAGCTAAGACAGAGCCTTAATTTCAAGGCAACACCTATGCCAGGATTTTATCAGGGACAGAGGACATCAAAAAGCAATTTGAATAAGGAGGTTGCCAAGCATGGTTCATCATTGGCCTGA 1542 43.13 MGESIVGALKDENKMGESAASDDVLEASVSFGRFENDSSLSWEKWSSFSPNKYLEEVEKCSTPGSVAQKKAYFEAHYKKIAARKAELLDLEKQMGTDPLGSDDPNCGDQIRNTDGNNTEFDVSNGQSSAEGVDQDTNLISVVTTTHVDEPSESNEGAPITIECQSSSVEEAEEELDSKQGTPKLKDGEETVSIKEEASPMGSQNVMELPPSLDNGTGNTPRIKKERPKLDPPKETKKITLANKERKTASVMKKAVSPIAKSPQISKPRDSKPTPTSKMISSSQPSIKKANGSSLPKNKNPSAGEIKKPSPRSKIPSAGEWKKVAPTSLHKSLSLGPPHSDSASLTTTRKSLIMEKMGDKDIVRRAFKTFQNSFNQLKPSSEVRSSVPKQVSAKSTEPRVSTSITTQRDKERPLKAGVVDQKNTKTAPTFGLRSNERAEKRKEFFKKLEEKSNAKQTEKTRLQSKSKEQKEVEIKKLRQSLNFKATPMPGFYQGQRTSKSNLNKEVAKHGSSLA* 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9882706 9887762 - Vvi1g796 Vvi1g796 769996

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g796 513 MobiDBLite consensus disorder prediction 377 513 - -
Vvi1g796 513 MobiDBLite consensus disorder prediction 403 417 - -
Vvi1g796 513 MobiDBLite consensus disorder prediction 1 20 - -
Vvi1g796 513 MobiDBLite consensus disorder prediction 490 506 - -
Vvi1g796 513 MobiDBLite consensus disorder prediction 377 402 - -
Vvi1g796 513 MobiDBLite consensus disorder prediction 266 299 - -
Vvi1g796 513 MobiDBLite consensus disorder prediction 196 218 - -
Vvi1g796 513 MobiDBLite consensus disorder prediction 332 347 - -
Vvi1g796 513 PANTHER F3I6.9 PROTEIN 1 503 - -
Vvi1g796 513 MobiDBLite consensus disorder prediction 219 250 - -
Vvi1g796 513 MobiDBLite consensus disorder prediction 106 166 - -
Vvi1g796 513 Pfam Targeting protein for Xklp2 (TPX2) domain 429 500 IPR027329 -
Vvi1g796 513 Coils Coil 444 464 - -
Vvi1g796 513 MobiDBLite consensus disorder prediction 171 193 - -
Vvi1g796 513 PANTHER F3I6.9 PROTEIN 1 503 - -
Vvi1g796 513 Coils Coil 161 181 - -
Vvi1g796 513 MobiDBLite consensus disorder prediction 433 477 - -
Vvi1g796 513 MobiDBLite consensus disorder prediction 94 347 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g796 - - - vvi:100258808 988.408
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g796 Blo01g00408 Blo16g01145 Bda01g02240 Bda11g01248 Bpe13g00476 . . . Cmo04g01677 . . . . . Sed06g1595 . Cpe01g01417 Bhi07g01660 Tan04g1166 Cmetu10g1704 . . . . Cla05g02506 Cam05g2690 Cec05g2723 Cco05g2758 Clacu05g2693 Cmu05g2547 Cre05g2662 . . . Cone12ag0619 Lsi04g00505 Csa05g02378 Chy10g00943 Cme10g00484 Blo06g00860 . . Bda11g01248 . . Bma01g00070 . . . . Cma04g01602 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003701 3 7 3 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 46