Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g797 ATGAGAACCGCTTCCACCTTGCCAAAATTATTCATTGCCATAGCTCTTCTATCCGGCCTCGTCAAACCTGATCCTGACCCACTTCAAGACTACTGCATCGCTGATACAAAAGCGTCCAAAGCTTTCTTCATCAATGGTGTGCCCTGCATTGACCCACAGCTAGCACAGGTCTCACACTTCACTACATCAGCACTGTCCAAACCCGGAAACACAAGTGCCAACCCCTTCGGTTTCAGTATCACACTCACCAACACCATGAACTTGCCAGGGTTCAACACAATGGGCCTGACCATGGCTCGGGCAGATATAGCAGCCAATGGGCTGGTCCCACTCCACAGCCACCCGAGGGCCTCGGAGGTGGCCACACTCCTAAAGGGTGCGCTCCTAGTGGGGTTCATCGACACCAGTAATCGTCTATTCACACAACTATTAAGGCCCGGTGACTCCTTTGTGTTCCCAAAAGGGATGATCCATTTTCTCTATAATCTTGACTCGTTAGCCCCAGCAGTGGTGTTGGCCGGCCTCAATAGCCAGAACCCTGGTACACAACTAACTTCTACGGCCGCGTTCGCAACAAACCCACGTTTACCGGATGAGGTTTTGAAGAAGGCATTTCAGATTAGCGGGCAGGATGTCGCCAGGATTCGGAGGAACCTTGGAGGGTGA 666 51.95 MRTASTLPKLFIAIALLSGLVKPDPDPLQDYCIADTKASKAFFINGVPCIDPQLAQVSHFTTSALSKPGNTSANPFGFSITLTNTMNLPGFNTMGLTMARADIAANGLVPLHSHPRASEVATLLKGALLVGFIDTSNRLFTQLLRPGDSFVFPKGMIHFLYNLDSLAPAVVLAGLNSQNPGTQLTSTAAFATNPRLPDEVLKKAFQISGQDVARIRRNLGG* 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9901186 9901852 + Vvi1g797 Vvi1g797 769997

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g797 221 Pfam Cupin 65 212 IPR006045 -
Vvi1g797 221 ProSitePatterns Germin family signature. 107 120 IPR019780 GO:0030145
Vvi1g797 221 CDD cupin_OxOx 24 219 - -
Vvi1g797 221 PRINTS Germin signature 112 132 IPR001929 GO:0030145
Vvi1g797 221 PRINTS Germin signature 142 162 IPR001929 GO:0030145
Vvi1g797 221 PRINTS Germin signature 176 191 IPR001929 GO:0030145
Vvi1g797 221 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 1 MEMBER 1 9 220 - -
Vvi1g797 221 SMART Cupin_1_3 63 213 IPR006045 -
Vvi1g797 221 Gene3D Jelly Rolls 23 221 IPR014710 -
Vvi1g797 221 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 9 220 - -
Vvi1g797 221 SUPERFAMILY RmlC-like cupins 24 218 IPR011051 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g797 - - - vvi:100246738 438.343
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g797 . Blo16g01144 . . Bpe13g01443 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0636 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012955 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28