Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g8 ATGGGAAGAGGTAGGGTTCAGCTGAAGCGCATAGAGAACAAGATCAATCGCCAAGTCACCTTCTCCAAGAGGAGGACTGGGTTGCTGAAGAAAGCTCATGAGATCTCGGTCTTGTGTGATGCAGAGGTTGCTTTGATTGTCTTCTCCACTAAAGGAAAGCTGTTTGAGTACTCAACTGATTCTTGCATGGAGAAGATCCTTGATCGCTATGAAAGATATTCTTATGCAGAGAGGCAGCTGACTGCAACTGATCCTGAATCACAGGGAAACTGGTCCCTTGAGTACTCCAAACTTAAGGCAAAGATTGAGCTTTTACAAAGAAGCCAAAGGCACTTTTTGGGGGAAGATCTGGATTCACTGAGTCTGAAAGAGCTCCAAAATTTGGAACAGCAGCTTGATACCGCTCTTAAACACATTCGATCAAGAAAAAACCAGCTAATGTATGAGTCAATTTCTGAACTTCAGAGGAAGGAAAAGGCAATGCAGGAGCAAAATAACATGCTAGCTAAGGAGATCAAGGAGAAGGAGAAGACTGTGGCACAGCAGACACATTGGGAGCAGCAAAACCATGGTCTTAATACATCATCCTTCCTACTGCCACAGCAGCTTCCCTGTCTAAACATGGGTGGGACTTACCAGGGAGAAGCACATGGAGCAAGGAGGAATGAGCTGGACCTTACGCTTGAACCAATATATCCCTCCCACCTTGGATGCTTCACGACGTGA 726 45.59 MGRGRVQLKRIENKINRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMEKILDRYERYSYAERQLTATDPESQGNWSLEYSKLKAKIELLQRSQRHFLGEDLDSLSLKELQNLEQQLDTALKHIRSRKNQLMYESISELQRKEKAMQEQNNMLAKEIKEKEKTVAQQTHWEQQNHGLNTSSFLLPQQLPCLNMGGTYQGEAHGARRNELDLTLEPIYPSHLGCFTT* 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 150381 175544 - Vvi1g8 Vvi1g8 769208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g8 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi1g8 241 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Vvi1g8 241 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 226 - -
Vvi1g8 241 Coils Coil 151 178 - -
Vvi1g8 241 Pfam K-box region 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi1g8 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi1g8 241 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Vvi1g8 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi1g8 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi1g8 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi1g8 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi1g8 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 226 - -
Vvi1g8 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi1g8 241 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Vvi1g8 241 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi1g8 241 Coils Coil 122 145 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g8 Vvi14g994 ECH
Vvi1g8 Vvi17g437 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14533 PF01486 K-box 7.70E-32 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g8 K09264 - vvi:100232952 480.33