Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi1g80 | ATGGGAACAAAGGTGCAGTGTAAAAGCTATTTGCCAGGATATTACTCCATGAGGGATCTTAATGAGGATTCTAACAGTGGTGGCTGGCCCCTTTATTATGGAGATAAAACATTGACAAATGGGCAATATTACAATGGGTTCCTGCCAAGGGCCATTGCAGATGCATATACTGGGTATGATAAGGATGTACTAAAGCAAACAATGCTTGAGCATGAGGCCATATTCAAAGATCAGGTCCATGAGCTCCACCGCCTTTACAGAAAACAAAGAAACTTGATGGATGAAATTAAAAGAAAGGAACTGCATAAGCAGAGGGTACCTGTTGAGACATCATTGTCATCAAGCCCCTTATCATCTCAAATGCCATCTGAAGAAGCTCGAAAATGGCATATCCCTGGCTTCCCATTGATAAATTCTGTTTGTGCTAGGAACAGTTCACCAGCTGGTCCTGTTCAATTCCAAAACGGAGGTTGTTCAAAGGATTGTGAGGTGCTGGAGTCCAGGCCCACAAAGCTTAGGAGAAAAATGTTCAATCTTCAACTTCCTGCTGATGAATACATCGATACTGAAGAAGGGGAACAGTTTGGTAACAATAAACTGTTTCTTGGCAGTGATAGGAAGACTTGTCGACAAGAAGATGTTTCGAAATCTAATTTTTGTTTAAGGAGCACAAATGCGTTGGCTGACCTGAATGAGCCTGTTCAGGCTGAAGAAGCAAAAGATCCTGCTTCTGTTGATTTTCTAGGCCGTCCCACCTGCCATGGGGAAACTCAAGATCAGGAACTGTCTGCTAAGCCCAAGTCAGAGTTTCTAGATTTTCCAAAGGGAAGTTTACAGAACTCCCATCATGGAAGTGACAATGGGACTTTGAACAATCTATATGGGCAGAGCAAAGGAAATGGGAGGGAGTGGTTGCCCTATATGCTGGAAGCAGGGCACGGTAAAAGTAACCCAAAATCTAATTCACAAGGTCTCCAACCAGAAAAGTTGCCTAGACCTTCCCAGCCAGGACAAGTTATGCTTAACAAGGCCCATGAGCCTCCAGCATTTCTTCTCACTGATCAAAACAAGGGAGATATGTGGAGGGAAAGGACATCGTCTGGTTTAGAAATCTCTGAGAAAAGTCAAGGTCTCTCAAATTATAACCATGCAGAACAGGCTGTCTCTTCTCATTTGCCCAGTCAATGTCAATTTGTCTTTTCCTCTGATTTGGCCAAGTCTTGGTCTCATTCAGTTTCATCGTGGGAAAAGATGAGCAGTGGCCTCAGTCAGAAGTCAATGTCAATTCAAACACAGCCGTTTTTAACTTCACCCACTACCCTGAGTAAGAGTTTGCAGTCATCAGCCCAGATAGCTAACCGAAATGGATTTTACCATGGGTCCTCATCTGGGTCCAAGGAACTACCAATTGGTTTTACATCAATTGGCTTTGACTATTTGAACTGCACTAATGGTGATAATATGAACTTGAATATGGTGCTTTCAAACACTTGTAAGAATGAGGCCTCCAATGTTCAAAATCTGTCTCAGAATGTTACATCAGCTGCCTATGCCTGTGATGTTGAGGCCAAGGAGATTGAGATAAGTGACTGCCCAAGGAATAGAAAAATTCTTGGCTTTCCTGTTTTTGAGAAGCCTCATGTTTCTAACAATGAGTCTTATTCGCTTACCTCCCCCTCTGCATCCCTTCTTTACTCATCTGAAGGTCAGGACATTGAAAATAATTGGAAAAACAGAGCACTTGATATTAACTTGCCTTGTGATCTTGCAGTTCCTGACTTGGGCAAGCAGACTCCTGCAGAAGTTCTGATTATAGAGAAGGGAGCACATTCTAATGTTGCCTGTGTTAGAAGTCACATCGATTTGAATTCTTGTATAACTGAGGATGATGCTTCAATGACTCCTGTTCCAAGCACCAATGTGAAGATTGCTTTGGAGATAGATCTGGAAGCCCCTGTAGTTCCTGAAACCGAGGAAGATGTTCTTTCTGGGTTGGAATCTATAGGAAAGCAGCATGATTCACCTGTACAATCACTGCCACACAAAGATGATGGCCTTCTGGATGAATTTGCCAGAATAGCAGCAGAAGCAATTGTTGCCATCTCATCATCTGGCAACTGCAGTGACCTGGAGAGCCCCACTCACTACCTCTCGGAAGCTCCTTTGAAGGACTCCTCCCTCCACTGGTTTGTGGAGGTAATTTCTTCTTGTGCAGATGATCTTGATAGCAAGTTCGGTTCAGTTTTGAGGGGCAAAGATTATGTAGATAATGAGGAACCCGGTGGAATTGATTATTTTGAGGCAATGACATTGAAATTGATAGAGACCAATGTAGATGAATACTTGCCTGAGCCTGTAGTTCCAGAAAACTCAAAAGTGGAAGAAACTGGAACTGCTTTAGTGCCAAATCGAACCCGAAAGGGGCAAGCTAGGAGAGGGAGGCAGAGGAGGGACTTTCAAAGGGACATCCTTCCTGGCCTTGCTTCTCTTTCAAGACACGAGGTGGCCATTACCACAGACGTGGCCATTACCACAGTGTGCAGTCCATTGGTGCAGCAGCTTACTAATATTGAAATGGGACTGGAGGATAGAAGCCTAACAGGGTGGGGGAAGACCACTAGACGGCCCCGTCGTCAAAGATGCCCTACAGGTAACCTTCCACCCCCTTTAACTTAA | 2676 | 43.95 | MGTKVQCKSYLPGYYSMRDLNEDSNSGGWPLYYGDKTLTNGQYYNGFLPRAIADAYTGYDKDVLKQTMLEHEAIFKDQVHELHRLYRKQRNLMDEIKRKELHKQRVPVETSLSSSPLSSQMPSEEARKWHIPGFPLINSVCARNSSPAGPVQFQNGGCSKDCEVLESRPTKLRRKMFNLQLPADEYIDTEEGEQFGNNKLFLGSDRKTCRQEDVSKSNFCLRSTNALADLNEPVQAEEAKDPASVDFLGRPTCHGETQDQELSAKPKSEFLDFPKGSLQNSHHGSDNGTLNNLYGQSKGNGREWLPYMLEAGHGKSNPKSNSQGLQPEKLPRPSQPGQVMLNKAHEPPAFLLTDQNKGDMWRERTSSGLEISEKSQGLSNYNHAEQAVSSHLPSQCQFVFSSDLAKSWSHSVSSWEKMSSGLSQKSMSIQTQPFLTSPTTLSKSLQSSAQIANRNGFYHGSSSGSKELPIGFTSIGFDYLNCTNGDNMNLNMVLSNTCKNEASNVQNLSQNVTSAAYACDVEAKEIEISDCPRNRKILGFPVFEKPHVSNNESYSLTSPSASLLYSSEGQDIENNWKNRALDINLPCDLAVPDLGKQTPAEVLIIEKGAHSNVACVRSHIDLNSCITEDDASMTPVPSTNVKIALEIDLEAPVVPETEEDVLSGLESIGKQHDSPVQSLPHKDDGLLDEFARIAAEAIVAISSSGNCSDLESPTHYLSEAPLKDSSLHWFVEVISSCADDLDSKFGSVLRGKDYVDNEEPGGIDYFEAMTLKLIETNVDEYLPEPVVPENSKVEETGTALVPNRTRKGQARRGRQRRDFQRDILPGLASLSRHEVAITTDVAITTVCSPLVQQLTNIEMGLEDRSLTGWGKTTRRPRRQRCPTGNLPPPLT* | 892 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 770019 | 779392 | - | Vvi1g80 | Vvi1g80 | 769280 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi1g80 | 891 | Coils | Coil | 79 | 99 | - | - | |
| Vvi1g80 | 891 | Pfam | Plant protein of unknown function (DUF863) | 143 | 501 | IPR008581 | - | |
| Vvi1g80 | 891 | Pfam | Plant protein of unknown function (DUF863) | 495 | 835 | IPR008581 | - | |
| Vvi1g80 | 891 | Pfam | Plant protein of unknown function (DUF863) | 838 | 882 | IPR008581 | - | |
| Vvi1g80 | 891 | MobiDBLite | consensus disorder prediction | 274 | 297 | - | - | |
| Vvi1g80 | 891 | MobiDBLite | consensus disorder prediction | 867 | 891 | - | - | |
| Vvi1g80 | 891 | MobiDBLite | consensus disorder prediction | 315 | 329 | - | - | |
| Vvi1g80 | 891 | MobiDBLite | consensus disorder prediction | 310 | 338 | - | - | |
| Vvi1g80 | 891 | PANTHER | TRANSCRIPTION FACTOR, PUTATIVE (DUF863)-RELATED | 841 | 886 | - | - | |
| Vvi1g80 | 891 | PANTHER | TRANSCRIPTION FACTOR, PUTATIVE (DUF863)-RELATED | 1 | 488 | - | - | |
| Vvi1g80 | 891 | PANTHER | TRANSCRIPTION FACTOR, PUTATIVE (DUF863)-RELATED | 496 | 835 | - | - | |
| Vvi1g80 | 891 | PANTHER | - | 496 | 835 | - | - | |
| Vvi1g80 | 891 | PANTHER | - | 1 | 488 | - | - | |
| Vvi1g80 | 891 | PANTHER | - | 841 | 886 | - | - | |
| Vvi1g80 | 891 | MobiDBLite | consensus disorder prediction | 104 | 124 | - | - | |
| Vvi1g80 | 891 | MobiDBLite | consensus disorder prediction | 107 | 122 | - | - | |
| Vvi1g80 | 891 | MobiDBLite | consensus disorder prediction | 235 | 297 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi1g80 | - | - | vvi:104879181 | 1652.88 |