Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g801 ATGGCTACATCTGAGGCGCCTGCGTCTCGGTCTGATGAATTCAAGTGGCAGAGAGTGGAGAAGCTCTGCAACGAAGTCAGAGAGTTCGGCGAAGAGCTGATTGATGTCGAGGAACTCGCCTCCATTTACGACTTTCGAATTGACAAGTTTCAGAGGTTAGCAATTCAAGCGTTCTTAAGAGGTTCATCGGTTGTAGTTTCCGCCCCGACAAGCAGCGGTAAGACTTTGATTGCAGAAGCTGCAGCTGTTGCCACAGTATCCAGGGGAAGGAGATTATTCTACACAACTCCGCTTAAGGCATTATCGAATCAGAAATTCCGCGAGTTCCGTGAGACCTTCGGTGATAATAATGTTGGCCTTCTTACTGGAGATTCTGCAGTCAACAAAGATGCTCAAGTTTTGATTATGACCACAGAGATCCTGAGAAACATGTTATATCAGAGTGTTGGAATGGTTTCTTCTGGGAGTGGGCTTTTCCATGTGGATGTAATTGTTTTGGATGAAGTGCATTATCTAAGTGACATATATCGGGGTACGGTCTGGGAAGAGATAGTTATATATTGCCCAAAAGAAGTTCAACTTATTTGTCTATCAGCTACAGTTGCAAATCCAGATGAGCTGGCTGGTTGGATTAGTCAGATACATGGTAAAACTGAGTTGGTCACATCATCAAAGCGTCCTGTTCCATTGACTTGGCACTTTTCTACAAAGACTTCTTTGTTACCTCTTCTTGACGAGAAGGGAAAAAGCATGAATAGGAAGCTGTCTCTCAGTTATTTACAAAATTATGCTTCAGGAGATAACTCTTACAAGGATGAGAGATCTAGAAGAAGGAATTTAAAAAAACGTGAAAGTGACATGAGCTACAGCAGTTTTGCTAGCATCCATGGACAATCCTCTCTTTCAAAGAATGACATAAACACAATTCGTCGTTCACAAGTTCCTCAAGTTATGGATACATTATGGCACCTTAAGGCAAGGGATATGCTGCCAGCAATTTGGTTTATTTTTAGCAGGAAAGGATGTGATGCGTCTGTTCAGTATCTTGAAGATTGCAATCTCCTAGATGAGTCTGAAATGAGTGAGGTTGATCTGGCCTTGAAAAGGTTCCGTCTTCAGTATCCTGATGCTGTCAGGGAGTCTGCTGTAAAAGGCCTTCTGCAAGGGGTTGCTGCACATCATGCTGGATGTCTACCCCTGTGGAAATCATTTATAGAAGAGCTGTTTCAACGAGGACTTGTTAAGGTTGTCTTCGCTACAGAGACACTTGCTGCTGGAATCAATATGCCTGCTAGGACAGCTGTTATTTCATCTCTCAGCAAAAGGGGTGAAAGTGGACGTATTCAATTGAGCTCAAATGAACTGCTTCAAATGGCTGGGCGTGCTGGACGTAGAGGTATTGATGAAAGTGGACATGCGGTGCTTGTTCAGACCCCCTACGATGGTGCTGAAGAATGCTGCAAGCTTCTCTTTGCTGGGGTTGAACCTCTTGTTTCACAGTTTACTGCTTCATATGGAATGGTTCTGAATCTTCTTGCAGGTGCAAAAGTTACTCGTAGATTGAGTGAATCCAATGATTTGAAGGTTCTCCAAGCAGGACGAACTCTGGAAGAAGCTAGGAAGTTAGTTGAGCAAAGTTTTGGAAACTATGTTGGGAGCAATGTTATGCTTGCTGCAAAAGAGGAGCTTACAAAAGTAGAGAAAGAGATTGAGGTGTTGTCTTCAGAAGTTACTGATGATGCTATTGATAGGAAGAGCCGGAAGCTGTTATCGGAGATGGCTTATAATGAGATTGCTAATCTGCAGGAAGAATTAAGGGCAGAAAAACGCTTGAGAACTGAGTTACGAAGAAGGATGGAATTGAGAAGAATGTCTGCCTTGAAACTACTATTGAAGGAGTCAGAAAATGGACATTTGCCTTTTGTGTGTTTGCAATATAAAGATTCTGAGGATGTTCAACACTTAGTCCCTGCTGTCTATTTAGGGAAGGTTGATTCATTTGATGGTTCAAAAGTCAAGAACATGGTTTATACCAATGATTGTTTTGCACTAAATGCAGTAGTGACAGAGCTAAATGTTGATGATACTGACAGTCAACCCAATGGCAAACCATCTTATTATGTGGCTCTTGGTTCAGATAACTCTTGGTATCTATTTACAGAAAAGTGGATTAAAACAGTTTATAGGACGGGCTTTCCTAATGTTGCCTTAGCTCAAGGTGATGCCTTGCCTCGGGAAATTATGAGGGCACTTCTTGATAAGGCAGACATACAGTGGGAGGAGCTTGCTAAGTCTGAACTGGGAGGTTTATGGTGTATTGAAGGATCCCTAGAGACATGGTCTTGGAGTTTAAATGTGCCAGTTTTGAGTAGCCTTTCTGAAGATGATGAGGTGTTAAAAATGTCTCAAGCATACTATGAAGCTGTAGAGTGCTACAAGGAGCAAAGAAATAAAGTTTCACGTTTGAAGAAAAAGATAGCACGCACGGAAGGGTTTAAAGAGTACAAGAAGATTATAGACATGAGTAAGTTCACTGAGGAAAAGATTAAACGCTTGAAGGCTAGATCAAATCGTTTGAGTAGTCGAATAGAGCAAATTGAACCATCTGGTTGGAAGGAGTTTCTGCAGGTCAGCAATGTCATACATGAAACTAGGGCATTGGATATCAATACACATATAATATTTCCTCTTGGGGAAACTGCAGCTGCAATTCGGGGAGAAAATGAACTCTGGCTTGCAATGGTTCTTCGGAGTAAAGTCTTACTGGGTTTAAAACCTGCACAACTTGCTGCAGTATGTGGAAGTTTAGTTTCTGAAGGGATCAAAGTTCGTCCTTGGAAAAACAACAGCTATATATATGAAGCTTCCACTACTGTAATCAATGTCATCAGTCTTTTGGATGAGCAAAGAAACTCCCTTTTGCAACTTCAAGAAAAACATGATGTACAGATACCTTGCTGTTTGGATAGCCAATTTTCTGGAATGGTTGAAGCCTGGGCATCTGGTTTAACTTGGAGGGAAATTATGATGGATTGTGCAATGGATGAGGGAGACCTAGCTCGCCTCTTACGGCGTACAATTGATATATTGGCTCAGATTCCCAAATTGCCTGATATTGACCCATTGCTGCAAAGCAACGCAATGACTGCATCCAATGTGATGGACCGCCCTCCAATAAGTGAGCTGGCTGGATGA 3195 42.07 MATSEAPASRSDEFKWQRVEKLCNEVREFGEELIDVEELASIYDFRIDKFQRLAIQAFLRGSSVVVSAPTSSGKTLIAEAAAVATVSRGRRLFYTTPLKALSNQKFREFRETFGDNNVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGMVSSGSGLFHVDVIVLDEVHYLSDIYRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWISQIHGKTELVTSSKRPVPLTWHFSTKTSLLPLLDEKGKSMNRKLSLSYLQNYASGDNSYKDERSRRRNLKKRESDMSYSSFASIHGQSSLSKNDINTIRRSQVPQVMDTLWHLKARDMLPAIWFIFSRKGCDASVQYLEDCNLLDESEMSEVDLALKRFRLQYPDAVRESAVKGLLQGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRGESGRIQLSSNELLQMAGRAGRRGIDESGHAVLVQTPYDGAEECCKLLFAGVEPLVSQFTASYGMVLNLLAGAKVTRRLSESNDLKVLQAGRTLEEARKLVEQSFGNYVGSNVMLAAKEELTKVEKEIEVLSSEVTDDAIDRKSRKLLSEMAYNEIANLQEELRAEKRLRTELRRRMELRRMSALKLLLKESENGHLPFVCLQYKDSEDVQHLVPAVYLGKVDSFDGSKVKNMVYTNDCFALNAVVTELNVDDTDSQPNGKPSYYVALGSDNSWYLFTEKWIKTVYRTGFPNVALAQGDALPREIMRALLDKADIQWEELAKSELGGLWCIEGSLETWSWSLNVPVLSSLSEDDEVLKMSQAYYEAVECYKEQRNKVSRLKKKIARTEGFKEYKKIIDMSKFTEEKIKRLKARSNRLSSRIEQIEPSGWKEFLQVSNVIHETRALDINTHIIFPLGETAAAIRGENELWLAMVLRSKVLLGLKPAQLAAVCGSLVSEGIKVRPWKNNSYIYEASTTVINVISLLDEQRNSLLQLQEKHDVQIPCCLDSQFSGMVEAWASGLTWREIMMDCAMDEGDLARLLRRTIDILAQIPKLPDIDPLLQSNAMTASNVMDRPPISELAG* 1065
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9932804 9946212 + Vvi1g801 Vvi1g801 770001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g801 1064 MobiDBLite consensus disorder prediction 269 285 - -
Vvi1g801 1064 Gene3D - 227 497 IPR027417 -
Vvi1g801 1064 Coils Coil 556 576 - -
Vvi1g801 1064 MobiDBLite consensus disorder prediction 268 291 - -
Vvi1g801 1064 Gene3D - 8 226 IPR027417 -
Vvi1g801 1064 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 55 219 IPR014001 -
Vvi1g801 1064 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 479 IPR027417 -
Vvi1g801 1064 CDD SF2_C_Ski2 321 478 - -
Vvi1g801 1064 Coils Coil 842 862 - -
Vvi1g801 1064 Coils Coil 591 618 - -
Vvi1g801 1064 Gene3D - 846 1056 - -
Vvi1g801 1064 Pfam DEAD/DEAH box helicase 50 202 IPR011545 GO:0003676|GO:0005524
Vvi1g801 1064 SMART helicmild6 380 466 IPR001650 -
Vvi1g801 1064 SMART ultradead3 43 233 IPR014001 -
Vvi1g801 1064 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 19 1060 - -
Vvi1g801 1064 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 313 512 IPR001650 -
Vvi1g801 1064 Pfam DSHCT (NUC185) domain 894 1059 IPR012961 -
Vvi1g801 1064 SMART DSHCT_2 889 1063 IPR012961 -
Vvi1g801 1064 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH15 CHLOROPLASTIC 19 1060 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g801 K26077 ISE2, EMB25; ATP-dependent RNA helicase ISE2 [EC:3.6.4.13] - vvi:100253458 2056.18
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g801 . Blo16g01143 . Bda11g01247 Bpe13g01442 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1006 Cone19ag1000 . . . . . . . . Bda07g01543 Bda11g01247 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01726 Chy09g00665 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012724 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28