Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g802 ATGAAACGGTCAAGAGATGATGTTTACATGGGCTCGCAACTCAAACGCCCTGCCGTCTCGTCGCGCGGCGGCGAAGGGTCTGGCCAGCCCCAAATGATGGGAGGAGGTACCCAGAAACTAACAACAAACGATGCCTTAGCTTATCTCAAGGCGGTGAAGGACATATTTCAAGACAAAAGGGATAAGTATGATGATTTTCTTGAAGTCATGAAAGATTTCAAGGCTCAAAGAATTGACACTGCAGGTGTCATAGCAAGGGTGAAAGAGTTATTTAAGGGGCATAGGGATCTAATTTTGGGTTTCAATACCTTCTTGCCAAAGGGATATGAGATCACCCTCCCACTTGAGGATGAACAGCCTCCAGTTAAGAAGCCTGTTGAATTTGAAGAAGCCATCAATTTTGTGAACAAGATTAAGACACGGTTTCAAGGAGATGATCATGTTTATAAGTCATTTTTAGACATTTTGAACATGTATCGGAAGGAAAACAAGTCCATCACTGAGGTCTACCAAGAGGTTGCTGCACTTTTCCATGATCACCCAGACCTGCTTGTGGAGTTCACTCATTTTCTGCCCGATACTTCAGCTGCCTCTACTCAATATGCGCCATCTGGTAGGAATCCTATGCACCGAGAGAGGGGCTCTCTCGTACCTCCATTGCGACAGATTCTTACTGACAAGAAGGAAAGGATTACTGCTTCACATGCTGACCGTGACCTCAGTGTCGACCGTCCTGACACAGACCATGATAGAATAATCATGAGAGCAGACAATCAACGGAGGGGTGGTGAAAAAGAAAAGGAGAGGAGAGATGACAGAGACCGGAGAGAGCGAGATGATAGAGACTTTGACCATGATGGCAATAGGGACTTTAATGGCATGCCACGTGTTCCCCACAAAAGGAAAGTTACCCGCAGAGTTGAAGACTCTGTTGCTGACCAAATAAACCAAGGTGGAGAAGGTGCTGAAAACTATGGAATGCGGCCAATGTCATCTTCTTATGATGATAAAAATGCCTTGAAAAGTATGTACAACCAGGAGTTTGTTTTCTGTGAGAAAGTGAAGGAGAAATTACGACAGTCTGATAGCTACCAGGAATTTTTGAAATGCCTTCATATTTATAGCAAGGAAATAATTACTCGAACAGAATTGCAATCTCTGGTTGGAGATTTAATTGGAAAGTATCCTGATCTTATGGACGAGTTCAATGAATTTTTGACCCGTTGTGAGAAGATTGATGGATTTCTTGCTGGTGTTATGAGTAAAAGACATTTACCCAGATCAGTGAAGATAGAGGATAGGGATAGAGATCGAGATCGTGAAAGGGATGATAGGGACAAAGATAGAGACCGGGAAAATAGAGAGAGGGATAGACTTGATAAAAGTGGAGGCTTTGGCAATAAAGATGCAGTTAATCAAAAGATGTCTTTGTTCCAAAACAAGGAGAAGTATATGGCAAAGCCCATTCAAGAACTTGATCTCTCTAACTGTGAGCGCTGTACTCCCAGTTATCGACTTCTTCCAAAGAATTATCCGATACCTTCTGCAAGCCAGAGAACAGAACTTGGTGCAGAAGTGTTGAATGACTATTGGGTGTCTGTCACTTCGGGAAGTGAGGATTATTCTTTTAAGCACATGCGCAAAAACCAATATGAAGAGAGTCTATTCCGATGTGAAGATGACAGGTTTGAACTGGACATGCTGTTAGAGTCTGTAAATGTAACAACTAAGCGTGTGGAAGAATTGTTAGATAAGATCAACAATAATACTATCAAAACAGATAGTCCAATTCGTATTGAGGACTACTTCACAGCTCTGAATCTTAGATGCATTGAACGTTTATATGGTGACCATGGGCTTGATGTGATGGACGTATTGAGGAAGAATGCAACTCTTGCTTTGCCAGTTATACTAACTCGCTTGAAACAGAAACAAGAGGAGTGGGCTAGGTGTCGTTCTGATTTTAATAAAGTTTGGGCAGAAATTTATGCCAAGAACTATCACAAATCTCTTGATCATCGCAGCTTCTATTTCAAGCAACAGGACTCAAAGAGCTCGAGCACAAAGGCTTTATTGGCTGAGATTAAAGAAATTAGTGAGAAGAAGCGGAAAGAGGATGATGTGCTTCTTGCTATTGCTGCTGGAAATAGACGACCTATCATTCCAAACTTGGAATTTGAGTACCCTGATTCAGACATTCATGAAGATTTGTACCAGCTTATCAAATATTCCTGTGGAGAAGTTTGTACAACTGAACAGTTGGATAAGGTTATGAAAATTTGGACAACCTTCCTGGAACCTATGCTTGGGGTTCCTTCTCGGCCCCAGGGTGCAGAGGACTCTGAAGATGTTGTGAAGACTAAGAGTCATGCTGCCAAGAATGGTGCTGCAAGCATTGGAGAAAGTGACGGGAGTCCTGGTGGTGGTGCAAGTGCGACAAACACCAAACAGATTAATTCATCTAGAAATGGAGATGAAACTATTCCACCTGAGCAATCAAGTTCTTGCAGGGTTTGGATGGTAAATGGAGATAATGGGGTTAAAGAAGATGGTTCTCTTGATGCAGACCGTATGCCACGTAAGGCTGATACTTTTTGTGCTAGTACTCAACAAGGGAAAATGCAGACCAGTGCTGCTATGGCTGATGAAATGTCTGGGGTCAGCAAACAAGCTACTTGTAATGAACGGGTGACCAATTCAAATGCCTCCCTTGCTAGTGGAGCAGAGCAGAGTCATGGAAGAACCAACATGGAAAATACGTCAGGACTTAATGCTACTCCTTCCAGAGCTAGTAATACTGCTCTTGAGAGTGGGCTCGAATTGAGACCAAGTAATGAAGTTTTACCTTCATCAGAGGTTGGTGATTGTATCAGACCAACTATATCTACAAATGGTGTGATGACAGAAGGTGTCAAAGCTCACAGATATCATGAAGAATCTGCTGGGAACTCAAAAATTGAAAGAGAAGAGGGTGAGTTATCTCCAAATGGAGATTTTGAGGAGGATAATTTTGCAGTCTATGGGGATGCCGGTGTTGAAGGTAAATCAAAGGATACTGCTGCAAGCAGGCAATATCAAACCAGACATGGAGTGGAAGAAATATGTTGTGGAGAAGCTGGGGGAGAAAATGATGCTGATGCTGATGATGAAGGTGAGGAAAGTGCTCAGAGGTCATCAGAAGACAGTGAGAACGCTTCTGAGAATGGTGATGTTTCAGGAAGTGAATCAGGTGAGGGTGAGGAATGCTCTCGTGAAGAGCATGAGGAAGATGGGGATCATGATGAGCATGATAACAAGGCTGAGAGTGAAGGTGAGGCTGAAGGAATGGCTGATGCACATGATGTTGAAGGAGATGGAACATTGTTACCATTTTCAGAACGTTTTCTACTAACTGTGAAGCCTCTTGCAAAGCATGTTCCTCCATCTTTACAGGACAAAGAGAAAAACTCTCGGGTTTTTTATGGAAATGATTCTTTTTATGTGCTTTTTAGGCTTCATCAAACACTGTATGAGAGAATGCAGTCAGCAAAGCTCAATTCATCTTCAGGTGAAAGGAAATGGAGAGCTTCAAGTGACACAAATTCTACTGATTTGTATGCCAGATTCATGAATGCACTTTACAATTTACTTGATGGTTCTTCTGACAATACAAAATTTGAGGATGATTGCCGAGCAATCATAGGAACTCAGTCATATGTTCTATTTACATTAGATAAGCTGATATATAAACTTGTCAAGCAGCTGCAAACAGTTGCAACAGATGAGATGGACAACAAGCTCCTCCAACTTTATGCATATGAAAAATCAAGAAAGCCTGGGAGATTTGTCGATATGGTTTATTATGAAAACTCCCGTGTTCTTCTTCATGACGAGAACATTTATCGCATTGAGTGTTCGTCTGCTCCCACTCATTTGACCATTCAGCTTATGGACAATGGGCATGATAAGCCTGAAGTGACTGCTGTTTCCATGGACCCTAATTTTGCAGCTTATCTTAACAGTGATTTCCTTTCAGTTGTTAATGAAAAAAAGAAATCTGGAATTTTTTTGAGGAGAAACAAGCGCAAATATGCACGAGGAGACGAGTTTTCTGTTGCGTGCCAGGCCATGGAAGGACTTCAAGTTGTCAATGGTCTTGAATGTAAGATAGCATGCAGTTCATCCAAGGTATCATATGTTTTAGACACAGAAGATTTCTTGTTCCGAGTGAGGAAGAAACGGAAAACTTCAGTGAGGAAGAGTTCATGCCATGACCAGGCAAAGTCTTCAAATGGCTGTTCAGTTAATGGATTCACAGATTGCTTTCTTCCTCCTAATCTGCCCTGCTGTGACTCTTAA 4338 42.0 MKRSRDDVYMGSQLKRPAVSSRGGEGSGQPQMMGGGTQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLILGFNTFLPKGYEITLPLEDEQPPVKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAALFHDHPDLLVEFTHFLPDTSAASTQYAPSGRNPMHRERGSLVPPLRQILTDKKERITASHADRDLSVDRPDTDHDRIIMRADNQRRGGEKEKERRDDRDRRERDDRDFDHDGNRDFNGMPRVPHKRKVTRRVEDSVADQINQGGEGAENYGMRPMSSSYDDKNALKSMYNQEFVFCEKVKEKLRQSDSYQEFLKCLHIYSKEIITRTELQSLVGDLIGKYPDLMDEFNEFLTRCEKIDGFLAGVMSKRHLPRSVKIEDRDRDRDRERDDRDKDRDRENRERDRLDKSGGFGNKDAVNQKMSLFQNKEKYMAKPIQELDLSNCERCTPSYRLLPKNYPIPSASQRTELGAEVLNDYWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINNNTIKTDSPIRIEDYFTALNLRCIERLYGDHGLDVMDVLRKNATLALPVILTRLKQKQEEWARCRSDFNKVWAEIYAKNYHKSLDHRSFYFKQQDSKSSSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPIIPNLEFEYPDSDIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFLEPMLGVPSRPQGAEDSEDVVKTKSHAAKNGAASIGESDGSPGGGASATNTKQINSSRNGDETIPPEQSSSCRVWMVNGDNGVKEDGSLDADRMPRKADTFCASTQQGKMQTSAAMADEMSGVSKQATCNERVTNSNASLASGAEQSHGRTNMENTSGLNATPSRASNTALESGLELRPSNEVLPSSEVGDCIRPTISTNGVMTEGVKAHRYHEESAGNSKIEREEGELSPNGDFEEDNFAVYGDAGVEGKSKDTAASRQYQTRHGVEEICCGEAGGENDADADDEGEESAQRSSEDSENASENGDVSGSESGEGEECSREEHEEDGDHDEHDNKAESEGEAEGMADAHDVEGDGTLLPFSERFLLTVKPLAKHVPPSLQDKEKNSRVFYGNDSFYVLFRLHQTLYERMQSAKLNSSSGERKWRASSDTNSTDLYARFMNALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQTVATDEMDNKLLQLYAYEKSRKPGRFVDMVYYENSRVLLHDENIYRIECSSAPTHLTIQLMDNGHDKPEVTAVSMDPNFAAYLNSDFLSVVNEKKKSGIFLRRNKRKYARGDEFSVACQAMEGLQVVNGLECKIACSSSKVSYVLDTEDFLFRVRKKRKTSVRKSSCHDQAKSSNGCSVNGFTDCFLPPNLPCCDS* 1446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9947451 9962409 - Vvi1g802 Vvi1g802 770002

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g802 1445 SUPERFAMILY PAH2 domain 120 193 IPR036600 GO:0006355
Vvi1g802 1445 MobiDBLite consensus disorder prediction 432 464 - -
Vvi1g802 1445 ProSiteProfiles PAH domain profile. 340 409 IPR003822 GO:0006355
Vvi1g802 1445 MobiDBLite consensus disorder prediction 769 837 - -
Vvi1g802 1445 MobiDBLite consensus disorder prediction 1 37 - -
Vvi1g802 1445 Pfam C-terminal domain of Sin3a protein 1153 1400 IPR031693 -
Vvi1g802 1445 Pfam Paired amphipathic helix repeat 61 105 IPR003822 GO:0006355
Vvi1g802 1445 Pfam Paired amphipathic helix repeat 147 191 IPR003822 GO:0006355
Vvi1g802 1445 Pfam Paired amphipathic helix repeat 362 406 IPR003822 GO:0006355
Vvi1g802 1445 MobiDBLite consensus disorder prediction 1042 1056 - -
Vvi1g802 1445 MobiDBLite consensus disorder prediction 977 993 - -
Vvi1g802 1445 MobiDBLite consensus disorder prediction 223 309 - -
Vvi1g802 1445 Gene3D Paired amphipathic helix 337 411 IPR036600 GO:0006355
Vvi1g802 1445 MobiDBLite consensus disorder prediction 807 837 - -
Vvi1g802 1445 Gene3D Paired amphipathic helix 44 106 IPR036600 GO:0006355
Vvi1g802 1445 MobiDBLite consensus disorder prediction 1089 1109 - -
Vvi1g802 1445 PANTHER SIN3B-RELATED 1 835 IPR039774 GO:0003714
Vvi1g802 1445 PANTHER SIN3B-RELATED 952 1422 IPR039774 GO:0003714
Vvi1g802 1445 MobiDBLite consensus disorder prediction 198 310 - -
Vvi1g802 1445 MobiDBLite consensus disorder prediction 977 1002 - -
Vvi1g802 1445 SMART hdac_interact2seq4b 496 596 IPR013194 -
Vvi1g802 1445 MobiDBLite consensus disorder prediction 1033 1109 - -
Vvi1g802 1445 SUPERFAMILY PAH2 domain 339 407 IPR036600 GO:0006355
Vvi1g802 1445 ProSiteProfiles PAH domain profile. 38 108 IPR003822 GO:0006355
Vvi1g802 1445 SUPERFAMILY PAH2 domain 38 107 IPR036600 GO:0006355
Vvi1g802 1445 ProSiteProfiles PAH domain profile. 124 194 IPR003822 GO:0006355
Vvi1g802 1445 MobiDBLite consensus disorder prediction 901 939 - -
Vvi1g802 1445 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 835 - -
Vvi1g802 1445 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 952 1422 - -
Vvi1g802 1445 Gene3D Paired amphipathic helix 122 195 IPR036600 GO:0006355
Vvi1g802 1445 MobiDBLite consensus disorder prediction 432 468 - -
Vvi1g802 1445 Pfam Sin3 family co-repressor 498 590 IPR013194 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g802 K11644 SIN3A; paired amphipathic helix protein Sin3a - vvi:100243213 2721.04
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g802 Vvi17g675 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g802 . Blo16g01142 . Bda11g01246 Bpe13g01441 Bpe10g00817 . Bma15g00207 Cmo04g01680 . . . . . Sed01g4034 . Cpe01g01419 Bhi07g01656 Tan04g1162 . . . . . Cla05g02504 Cam05g2688 Cec05g2721 Cco05g2756 Clacu05g2691 Cmu05g2545 Cre05g2660 Cone13ag1005 Cone19ag0999 Cone8ag0633 Cone12ag0617 Lsi04g00502 Csa05g02381 Chy10g00946 Cme10g00481 . . Bda07g01576 Bda11g01246 Bpe11g01747 . Bma01g00071 . . . . Cma04g01604 . Car04g01646 . . . . . . . . . . . . . . . . . . Csa05g01727 Chy09g00667 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003861 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 2 2 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14534 PF16879 Sin3a_C 5.30E-60 No_clan Vvi TR