Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g803 ATGTTGCGAATGATAATTCCCCGCGAGCCTCTCTCGGACAAAACCGTCTCAACTCGTGATCTGAAGCACCGAGTCATCACCTGCCTCAACAAGCTCTCCGACCGGGACACCCTCGCTGTCGGGACGGCCGAGCTCGAATCCATCGCTCGGAATCTCACGCACGATTCCTTCTCTCCCTTCCTCTCATGCCTCTATGGTACCGATTCCTCCGAGAAATCGCCTGTAAGGAAGCAATGCGTTCGTCTCTTAGGTGTGCTCTCGGAGACTCACGGCGACTCTCTCTCTCCTCACCTCTCCAAAATGCTATCCAACGTCGTTCGTCGCCTTCGTGACTCCGATTCCGCCGTCCGATTGGCCTGCGTTGACGCCGTCGGTGTTATGTCGTCGCAGATCACGAAACCACCATTTTCCGCATTTTTGAAGCCCTTGACTGATTCAATATTGCTTGAGCAAGATTATAATTTGCAAATCGGTTCCGCGCTTTGCATTGCGGCAGCGATCGAGGCCGCGCCCGATCCAGAGCCGGAGCAGCTGCTGAAGCTCCTGCCGAGGCTACTGAAGTTAGCAAAGAGCGAGAGCTTCAGAGCGAAGCCGGCATTGTTGTCGCTCATCGGTAGCATTATTGGTGCCGGTGGGGCGTCCACTCGTGGTGTGTTGAATAGTCTGGTTCCGTGCTTGGTTGAGTTTTTGAGTAGTGAGGACTGGGCAGCGAGGAAGGCTTCGGCGGAGGCGTTGGCTAGATTAGCTCTCGTGGAGAGAGATTTGGCAACCGAGTTCAAGTCCTCGTCTTTGTCTTCTTTGGAGAGTCGGAGATTTGATAAGGTCAAGGTGGTCAGGGACACTATGAATCGCACCTTGGATTTGTGGAAGGAGCTTCCATGTGACTCCAACGGTCTCTTGCCCCTGTCTCCATCTAAAGCTTCTTCAAAAGATAATGGTGCTGGTGGATGCTTCCCTCCTGCCTCCAAAATTTCCTGTGATGTTGGTTTTGAGACTCCTCAGCCAAAGAAAATAATCCCCACAAGATCACCTCCATCAGATAATTCATTAGTAACCACTGCGAGAAAGAGAAGCCCTTTACAGAGTAGTAATAATGGGAAATCGACTACTGCAATGTTCCGTAAGCTAGACTGCAAGAAACCCTCTGATTGGAAAGTTGAAGTTGCTGTTCCCCATCCATCCTCTTCAAAAGTGGCTTGTGAAGATGATCTTAAAAGGAGGTACTTGGTAGTTTCAGATTCGGAGGAGAATGGAAACTGCGGGGATTCAAGACCAGAAACAAACCGTGTCCTCTTTAGTAAGATCAGTAATGAAAAAATGCATAAATTTGGTTGCTTGAGATCTGGGTCTCGCATTGTCCCCTTTCATGAGAATAATAATTCTGAGTCAGCTGTCGTGGATAGCAATGCTACTGAAGAAGAAATCTATGAAAACCAAAAGGACATAGAGGATCTGTCTTTGATTCGCAAACAGCTTATCCAGATTGAGAACCAGCAATCCAGTATGTTAAATCTCCTCCAGAGGTTTATTGGCAACTCCCAAAGTGGGATAAACTCTCTGGAGACCCGTGTAAATGGCCTGGAGATGGTACTGGAGGAAATATCATTTGATTTGGCAATATCAAGTGGAAGGGTATCAAACTCTGATTCTGCAGGGAACACATGTTGCAAGCTGCCCGGAGCAGAATTCTTGAGTTCTAAGTTTTGGAAGAGAACAGAAGGCCATACGACTTCAAGATTCTCTTCTACTGGCAGCATCCAAGCATTAACTACCATAAATAATATGCCCAATAAATATGCCAGCAATATGGTAGATGAACAAAAGCTTCAGCACCAAAATTTGGATGGATTTGTTGCAAATCCATTAGCTGATATTCATGGCACTTCAAGAACTCTAATTGATGGGGCATCTCCAGCTACTCAAACAATGCCAGTGAACCTTAGCCGCAGATTAGCTGCATAG 1962 47.55 MLRMIIPREPLSDKTVSTRDLKHRVITCLNKLSDRDTLAVGTAELESIARNLTHDSFSPFLSCLYGTDSSEKSPVRKQCVRLLGVLSETHGDSLSPHLSKMLSNVVRRLRDSDSAVRLACVDAVGVMSSQITKPPFSAFLKPLTDSILLEQDYNLQIGSALCIAAAIEAAPDPEPEQLLKLLPRLLKLAKSESFRAKPALLSLIGSIIGAGGASTRGVLNSLVPCLVEFLSSEDWAARKASAEALARLALVERDLATEFKSSSLSSLESRRFDKVKVVRDTMNRTLDLWKELPCDSNGLLPLSPSKASSKDNGAGGCFPPASKISCDVGFETPQPKKIIPTRSPPSDNSLVTTARKRSPLQSSNNGKSTTAMFRKLDCKKPSDWKVEVAVPHPSSSKVACEDDLKRRYLVVSDSEENGNCGDSRPETNRVLFSKISNEKMHKFGCLRSGSRIVPFHENNNSESAVVDSNATEEEIYENQKDIEDLSLIRKQLIQIENQQSSMLNLLQRFIGNSQSGINSLETRVNGLEMVLEEISFDLAISSGRVSNSDSAGNTCCKLPGAEFLSSKFWKRTEGHTTSRFSSTGSIQALTTINNMPNKYASNMVDEQKLQHQNLDGFVANPLADIHGTSRTLIDGASPATQTMPVNLSRRLAA* 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9978810 9987365 + Vvi1g803 Vvi1g803 770003

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g803 653 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 13 632 IPR033337 GO:0005874|GO:0008017
Vvi1g803 653 PANTHER TORTIFOLIA1-LIKE PROTEIN 4 13 632 - -
Vvi1g803 653 SUPERFAMILY ARM repeat 41 279 IPR016024 -
Vvi1g803 653 MobiDBLite consensus disorder prediction 341 371 - -
Vvi1g803 653 Gene3D - 14 314 IPR011989 -
Vvi1g803 653 MobiDBLite consensus disorder prediction 333 372 - -
Vvi1g803 653 Pfam HEAT repeat 222 249 IPR000357 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g803 - - - vvi:100260313 1186.4
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g803 Vvi17g669 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g803 Blo01g00409 Blo16g01141 Bda01g02242 . Bpe13g00475 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00072 . . . . . . . . . Cpe07g00613 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005532 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 40