Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g807 ATGAATCTCACATCTTCACTAGCCGTCCTTCATCTCTTCTTCTTCTTCTTCTTCTTCTCCTCTTTCTTTGCTGTCGCTGTTGCGATTGAAGACGACGTCGTTTGTCTCCAAGGCCTCAAGGACTCTCTTACAGACCCAGATGATAAGATCAGCACTTGGAGGTTCACCAACACCTCTGCCTCCTTTATCTGCAATCTCGTCGGCGTCTCTTGCTGGAACGCGCAGGAGAGCCGCATCATCAGCCTCCAACTTCCTGATATGAACCTCATCGGTACCTTACCCGACTCCCTTCAGCACTGCCGAAGTCTCCAGAGTCTTGGTCTCTCTGGTAATCGTATCTCGGGCTCAAGAAGTTTTCCGTTGCCAACAATGATCTCTCCGGTTCAATACCGTCCGAGTTCGTTGCTATTAGGTTTTGCGCTTTGGTGGTGGTTTTTCGTTAGGCTGAATCGGAAAAAGAGAGGCTACAGTGGTGGTGATAGTGGCAAGATTGGTGGTAGTTGGGCGGAGCGGTTGCGGATGCACAAACTGGTTCAGGTGTCGCTGTTCCAGAAACCCATTGTAAAGATCAAGTTAGCCGATTTGATGGCGGCTACTAATAATTTTGACCCTGAATATCTTCTTTGTTCTACAAGAACAGGGGTTTCCTATAAGGCTGTGTTGCTGGATGGATCTGCTTTGGCTATCAAACGTCTCAGTGCCTGTAAGCTCAGTGACAAGCAGTTTCGGTCTGAAATGAATAGTACTAGTTTTCATTCACAGCACCACTCGATTGATTGGCCTACTAGGCTTAGGATTGGTGTAGGTGCTGCTAGAGGGCTTGCCTGGCTTCACCACGGTTGTCAACCCCCATACATGCACCAGAACATTAGTTCCAGTGTGATTCTTCTTGATGATGATTATGATGCTCGGATAACGGATTTTGGGTTAGCAAGGCTTGTGGCTTCTGCTGACTCTAATGATAGTTCTTTTGTTAATGGGGACCTTGGAGAATTTGGTTATGTGGCTCCAGAGTACTCGAGCACTATGGTCCCTTCACTAAAGGGCGATGTTTATGGTTTTGGGGTTGTGCTTCTTGAGCTGGTGACTGGGCAGAAGCCTCTGGAGGAAAGCTTTGTAAACTTCATTGTTTTATTATGCACTTAA 1146 47.12 MNLTSSLAVLHLFFFFFFFSSFFAVAVAIEDDVVCLQGLKDSLTDPDDKISTWRFTNTSASFICNLVGVSCWNAQESRIISLQLPDMNLIGTLPDSLQHCRSLQSLGLSGNRISGSRSFPLPTMISPVQYRPSSLLLGFALWWWFFVRLNRKKRGYSGGDSGKIGGSWAERLRMHKLVQVSLFQKPIVKIKLADLMAATNNFDPEYLLCSTRTGVSYKAVLLDGSALAIKRLSACKLSDKQFRSEMNSTSFHSQHHSIDWPTRLRIGVGAARGLAWLHHGCQPPYMHQNISSSVILLDDDYDARITDFGLARLVASADSNDSSFVNGDLGEFGYVAPEYSSTMVPSLKGDVYGFGVVLLELVTGQKPLEESFVNFIVLLCT* 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10044522 10046730 + Vvi1g807 Vvi1g807 770007

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g807 381 Pfam Leucine rich repeat N-terminal domain 30 72 IPR013210 -
Vvi1g807 381 SUPERFAMILY Protein kinase-like (PK-like) 178 371 IPR011009 -
Vvi1g807 381 Gene3D Phosphorylase Kinase; domain 1 162 253 - -
Vvi1g807 381 Gene3D Transferase(Phosphotransferase) domain 1 254 377 - -
Vvi1g807 381 ProSiteProfiles Protein kinase domain profile. 150 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g807 381 Gene3D Ribonuclease Inhibitor 28 129 IPR032675 -
Vvi1g807 381 SUPERFAMILY L domain-like 28 117 - -
Vvi1g807 381 PANTHER - 133 248 - -
Vvi1g807 381 PANTHER - 12 116 - -
Vvi1g807 381 PANTHER - 254 369 - -
Vvi1g807 381 Pfam Protein tyrosine and serine/threonine kinase 254 370 IPR001245 GO:0004672|GO:0006468
Vvi1g807 381 PANTHER OS07G0107800 PROTEIN-RELATED 254 369 - -
Vvi1g807 381 PANTHER OS07G0107800 PROTEIN-RELATED 133 248 - -
Vvi1g807 381 PANTHER OS07G0107800 PROTEIN-RELATED 12 116 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g807 - - - vvi:100262086 446.817
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g807 Vvi14g1444 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g807 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1003 Cone19ag0996 . . . . . . . Blo11g00747 . . Bpe11g01618 . . . . Cmo04g02871 . . . . . Cpe13g00930 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001182 2 2 1 4 2 2 3 1 1 2 3 2 3 2 1 2 2 8 3 2 3 1 1 2 2 2 1 1 1 3 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76522 PF07714 PK_Tyr_Ser-Thr 4.50E-16 CL0016 Vvi PK