Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g81 ATGCGTCAACAACTTCATTTCCTCTTTTTTATCATAAGGTTGTTGATAATGAGAGTGTCCTCCTGGAATAAATGTCACATAAATGGCAACCTACATACACTTATACCCAAAGGAGGGTCAATTCATGGTTTCACGGCGAAGAATGGGTGGGAGTTGAGTGTGGACCTTGGTACGGTTTTGGTGGACATGTACGCCAAGTGTGGATTTCTTAAGAGTGCTTTCCGGGTTTTTGATTTGATGCAGGAAAAGAATGTGGCGTCTTGGACTGCATTGATTTGTGGTTCTGCTCAACATGGATATGGGAAAGAAGCCTTGTCCATGTTTGAGCTGATGCAAGATATGGGCGTGAAACCCAATGAGATGACTTTCACCGGGATTCTCAGTGCTTGTGCACAAGCAGGATTAGTTGAGGAAGGCCGCAAGTATTTCAACAAGATTGAGGAGTATGGGTTGGAGCCAAGAATTCAACATTTTGGCTGCATGGTTGATTTGTTTGGTAAGGCAGGGCTTTTAGAGGAAGCTTATGAAATTATTAATTCAATGAAACTTGAGCCCAATGTTGTTTTGTGGAGCTCATTTTTGTCATCTTGTAAAGTGCACAAGCAGTTTGAGCTGGCAGAGAGAGTGACTGAGCAGGTTTTAAGGACAGTAAAGCCGGAGAACGATGGAGGGGTTTATACCCTTATTTCCAATTTATTTGTTCTGAATGATAAGTGGGATGATGCAGAGAGAGTGAGGAAATTAATGGTCAATCAAAAAGTGAGGAAGGCAAGAGGATCTAGTTTCATCAGAAGTGGATCTGTCTAG 807 42.26 MRQQLHFLFFIIRLLIMRVSSWNKCHINGNLHTLIPKGGSIHGFTAKNGWELSVDLGTVLVDMYAKCGFLKSAFRVFDLMQEKNVASWTALICGSAQHGYGKEALSMFELMQDMGVKPNEMTFTGILSACAQAGLVEEGRKYFNKIEEYGLEPRIQHFGCMVDLFGKAGLLEEAYEIINSMKLEPNVVLWSSFLSSCKVHKQFELAERVTEQVLRTVKPENDGGVYTLISNLFVLNDKWDDAERVRKLMVNQKVRKARGSSFIRSGSV* 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 785437 792711 + Vvi1g81 Vvi1g81 769281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g81 268 PANTHER - 37 266 - -
Vvi1g81 268 TIGRFAM PPR: pentatricopeptide repeat domain 122 153 IPR002885 -
Vvi1g81 268 TIGRFAM PPR: pentatricopeptide repeat domain 87 120 IPR002885 -
Vvi1g81 268 TIGRFAM PPR: pentatricopeptide repeat domain 58 85 IPR002885 -
Vvi1g81 268 TIGRFAM PPR: pentatricopeptide repeat domain 158 182 IPR002885 -
Vvi1g81 268 Pfam PPR repeat family 83 131 IPR002885 -
Vvi1g81 268 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 119 153 IPR002885 -
Vvi1g81 268 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 37 266 - -
Vvi1g81 268 Pfam PPR repeat 158 182 IPR002885 -
Vvi1g81 268 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 84 118 IPR002885 -
Vvi1g81 268 Pfam E motif 200 263 IPR046848 -
Vvi1g81 268 Gene3D Tetratricopeptide repeat domain 58 268 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g81 - - vvi:100267935 465.307