Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g812 ATGGCTAAACATCCAGATCCTGAAGCCACTGGAGAACATACGGAGCTGACAAATCTAATACTACAAGAGAACCCTAAGCCTGTTGTTCTTCTAATGTCTTTCTCAAATCTTTTCATGCTAAAAGAACTGGATGCTCGTGCTTGGAAAATATCTGGCAGTATTTCTGATTTTGAGAAGTTGTCTTCATTAGAAGATTTAAATCTTGGTCATAATAATTTTTGCAGCCTCCCATCTAGTTTGCAGGGCCTTTCAGTTCTCAAAAATCTGTTTTTACCCCACTGTAAGGAGATCAATTCTCTCCCTCCACTTCCCTCAAGTTTGATTAAGTTGAATGTTTCAAATTGTTGTGCATTGCAAAGTGTGTCGGACCTGTCAAATTTGAAGAGTTTAGAGGACCTGAACCTCACAAACTGCAAGAAAATAATGGATATTCCTGGCCTTCAATGCTTGAAGTCATTGAAAAGGTTTTATGCAAGTGGTTGCAATGCATGTCTTCCAGCGCTAAAGAGTAGGATCACTAAGGTTGCATTGAAGCATTTATACAATTTGAGCGTCCCAGGGAGTGAAATCCCAAATTGGTTTGTCCAAGAAATCCCTTGCTTTTCTAGTCACAGAAACCTTAAAGTTACAGGTGTGGTCATCGGTGTCGTGGTCTGTGTCTCTGTCAACCCTCAAATGCATAATGCTTACAGTGATAAGGTCCCAGTAATAGTGGATGTTCAAGCAAAGCTCTTCAGACGTAACGAGGACAAACCAGTACATTCTACTACACTGAAGTTAGAGGGAGTTGCTGACACAAATGAAGATCAGCTCTACTTGTGCCGTTTTCTGGACTTCAAATCACTAGTCCTTATGTTGAAAGATGGTGATAAGATACAAGTGGCTGTGCGAGACAAACCACTACTGTTACCAAAGCCGAAGATGACGACCGACGCCGTTTCATCCACGCCGACAGCTTCAACTCCGGCAGTCAGACGCCGGTGGGACGTGTTCCTCAGTTTCAGAGGCGAAGACACTCGCGGCACCTTCACCGACTGTCTCTACACCCGTCTTCAGCATAAAGGCGTTCGAGCCTTTCGAGACAACGAAGGCTTGAACCGAGGTGATAAGATCGATCGTTGTCTACTCGACGCCATCGAGGACTCTGCGGCTTTCATTGCTATTATTTCACCCAATTACGCTAACTCTCGTTGGTGCCTGGAAGAACTCGCCAAGGTCTGCGAGTGCAACCGGCTCATTCTTCCCGTTTTCTACAACGTGGATCCTTCGCACGTCCGGGGACAGAGGGGGCCTTTCCTTCAACATTTTAAAGACCTGGAGGCACGGTTTGGTGAAGAGGATGTTTCGAAATGGAGAAAAGCTATGAAATATGTTGGCGGACTCGCCGGTTTTTTCCTGTCTATTGGCAGGTTTGGCGACGAAGCAGATGTGATTCAAACTTTGTTGAATAATGTTTTGGCTGAATTGAGCAAGTGGAGCGGTGTGGCTGCCTTTACTGTTGGACTCGATTCTCGTGTAGAAGAAGTGTTGGAGTTGTTAGACCTTAAATCCAACAGCATCAGAGTCTTAGGACTTTATGGACCAGGTGGGGTTGGTAAATCAACCCTTGCCAAGGCTCTTTATAATAAACTTGTCGCTCACTTTGAAAACCGCAGTTTCATTTCAAATGTCAAAAAATATTTGGCACAAGAAAATGGTCTGCTATCTCTCCAAATCAAACTCATTGGGGATCTTTCCGGTATGGCTTCACATGTAAATGAAGTTAATGCTGGTCTTGTTGCCATCAAAAGCATAGTTCTGCATGAGCTTCATGAGAACGAGCTCTATGAGGTGAAACAGTTGAATTCCCCTGAGTCGCTACAACTTTTTAGTCACTATGCATTAGGGAGAGTGAAACCCACCCCAGACTACCTTCCTCTGTCCAAACAAATTGTATCTCTTACAGGAGGACTGCCCTTGGCTCTGGAAGTATTTGGTTCTTCTTTTGAGATTTTGCGTGTCTTGCAGAATAACTTGGGATCAAGATGTATTCAAGGTATGGTCCTAGATTTTGTGAGTGATATCTTTATGAAGGATTCTGCTGCTGCTTGGGGTCGCTTTAGAGGAACACCCAATTTCACCACAGCAGTTACATGGCTAAAGGAAACATATAAGGAATATTTTCAACATGCAGCAGAGAAAGAGAGGGAATTGATACTTCAAACTAAGTCATTTGAATCCATGATTAACCTAAGACTGCTTCAAATCGATAATGTACAATTAGAAGGAGAATTCAAACTCATGCCTGCAGAACTGAAGTGGCTACAATGGAGAGGATGCCCTTTGAAAACTCTTCCTTCTGATTTCTGTCCTCAAGGACTTAGGGTCCTAGATCTTTCCGAAAGCAAGAATATTGAGCGACTGTGGGGCGGCAGATGGTGGAGCTGGCACAATAACAAGGTGGGTGAGAACTTGATGGTCATGAATCTCCATGGTTGCTGTAATTTAACTGCCATTCCAGATTTATCTGGAAATCAAGCCTTGGAAAAGTTGATTCTTCAGCATTGCCATGGCCTAGTTAAGATTCATAAGTCGATCGGGGACATCATTAGTTTACTTCATTTGGACCTGAGCGAATGTAAGAACCTTGTTGAATTTCCAAGTGATGTCTCTGGGCTGAAAAATCTCCAGACCCTTATCCTCTCTGGTTGCTCCAAACTGAAGGAATTACCAGAGAACATAAGCTACATGAAATCTTTAAGAGAACTCCTTCTTGATGGAACTGTTATAGAGAAGCTACCTGAATCTGTACTCCGTCTCACAAGACTTGAAAGGCTTAGTCTAAATAATTGCCACCCAGTCAATGAATTGCCCGCTTCTATCGTCCTTGGTGCAGAAGAGAATTCGGAGCTCATTGTACTTCCAACTTCTTTCTCAAATCTCTCCTTGTTGTATGAATTGGATGCTCGCGCTTGGAAAATATCTGGTAAAATTCCTGATGATTTTGATAAGCTGTCATCGTTGGAGATTTTGAATCTTGGTCGTAATAACTTCAGCAGTCTTCCGTCTAGTCTGAGGGGCCTTTCCATTCTCAGAAAGCTTCTTTTGCCCCATTGTGAAGAGCTCAAGGCTCTCCCTCCACTTCCCTCAAGTTTGATGGAGGTGAATGCTGCAAACTGTTATGCTTTGGAAGTTATATCTGATCTGTCAAACTTGGAGAGTTTACAAGAGCTGAATCTTACAAACTGTAAGAAATTAGTGGATATTCCAGGCGTTGAATGCTTGAAGTCATTGAAAGGTTTCTTTATGAGTGGTTGCAGTTCATGCTCTTCCACGGTAAAGAGAAGACTCAGTAAGGTTGCTTTGAAGAATTTGCGCACTTTAAGTATTCCTGGAAGCAATATCCCAGACTGGTTTTCTCGCAATGTTGCCATTTTCTCAAAGCGCAAAAACCTTGTAATCAAAGCTGTGATTATAGGAGTTGTGGTCTCTCTCAGCCATCACATACAGGACGAATTAAGAGATCAACTTCCCTCAGTCCCAGGCATCGAAGCGAAGATCCTTAGAATGAACAGACAGGTATTTGGCACCATGCTGGACTTAACAGGAGTACCAAAGACGGATGAAGATCATCTATACTTGTGTAGATATCGTGAGTTTCACCCCATAGTCTCTATGCTGAAAGATGGCGATAAGATACAGGTGACAATGAGAAATCCACCGATGGTTAAAGGGGTAGAGCTGAAGAAATCTGGGATTCATCTGATTTTCGAAAATGATGATGATTACGATGAAGATGAGAGATCATTTGATGAAAACCTACAAACTGTATCAGAAAAAATAGCAAGATTTTTTGGTCCTTCTGAAGGAGGTAATAGCATCTCTGACTCCATAGATGAGGTCGAACGAGAAAAGCAGGAAATGGGAATGAAAGAGGAATGGAAGGAAGAGAAGAAGGGCCGTGATGGTAGCCATAGAAGTTCATTTCTTCTTTTCTTCTTCATTGCCCTTCCTTCCTTCTTTCTGTTGTTGAGTTGGTCGTGGACACGCGGCTAG 4035 42.85 MAKHPDPEATGEHTELTNLILQENPKPVVLLMSFSNLFMLKELDARAWKISGSISDFEKLSSLEDLNLGHNNFCSLPSSLQGLSVLKNLFLPHCKEINSLPPLPSSLIKLNVSNCCALQSVSDLSNLKSLEDLNLTNCKKIMDIPGLQCLKSLKRFYASGCNACLPALKSRITKVALKHLYNLSVPGSEIPNWFVQEIPCFSSHRNLKVTGVVIGVVVCVSVNPQMHNAYSDKVPVIVDVQAKLFRRNEDKPVHSTTLKLEGVADTNEDQLYLCRFLDFKSLVLMLKDGDKIQVAVRDKPLLLPKPKMTTDAVSSTPTASTPAVRRRWDVFLSFRGEDTRGTFTDCLYTRLQHKGVRAFRDNEGLNRGDKIDRCLLDAIEDSAAFIAIISPNYANSRWCLEELAKVCECNRLILPVFYNVDPSHVRGQRGPFLQHFKDLEARFGEEDVSKWRKAMKYVGGLAGFFLSIGRFGDEADVIQTLLNNVLAELSKWSGVAAFTVGLDSRVEEVLELLDLKSNSIRVLGLYGPGGVGKSTLAKALYNKLVAHFENRSFISNVKKYLAQENGLLSLQIKLIGDLSGMASHVNEVNAGLVAIKSIVLHELHENELYEVKQLNSPESLQLFSHYALGRVKPTPDYLPLSKQIVSLTGGLPLALEVFGSSFEILRVLQNNLGSRCIQGMVLDFVSDIFMKDSAAAWGRFRGTPNFTTAVTWLKETYKEYFQHAAEKERELILQTKSFESMINLRLLQIDNVQLEGEFKLMPAELKWLQWRGCPLKTLPSDFCPQGLRVLDLSESKNIERLWGGRWWSWHNNKVGENLMVMNLHGCCNLTAIPDLSGNQALEKLILQHCHGLVKIHKSIGDIISLLHLDLSECKNLVEFPSDVSGLKNLQTLILSGCSKLKELPENISYMKSLRELLLDGTVIEKLPESVLRLTRLERLSLNNCHPVNELPASIVLGAEENSELIVLPTSFSNLSLLYELDARAWKISGKIPDDFDKLSSLEILNLGRNNFSSLPSSLRGLSILRKLLLPHCEELKALPPLPSSLMEVNAANCYALEVISDLSNLESLQELNLTNCKKLVDIPGVECLKSLKGFFMSGCSSCSSTVKRRLSKVALKNLRTLSIPGSNIPDWFSRNVAIFSKRKNLVIKAVIIGVVVSLSHHIQDELRDQLPSVPGIEAKILRMNRQVFGTMLDLTGVPKTDEDHLYLCRYREFHPIVSMLKDGDKIQVTMRNPPMVKGVELKKSGIHLIFENDDDYDEDERSFDENLQTVSEKIARFFGPSEGGNSISDSIDEVEREKQEMGMKEEWKEEKKGRDGSHRSSFLLFFFIALPSFFLLLSWSWTRG* 1345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10114880 10136219 + Vvi1g812 Vvi1g812 770012

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g812 1344 Gene3D - 492 612 IPR027417 -
Vvi1g812 1344 Gene3D - 613 670 IPR042197 -
Vvi1g812 1344 PANTHER TMV RESISTANCE PROTEIN N-LIKE 612 661 - -
Vvi1g812 1344 PANTHER TMV RESISTANCE PROTEIN N-LIKE 325 588 - -
Vvi1g812 1344 PANTHER TMV RESISTANCE PROTEIN N-LIKE 60 299 - -
Vvi1g812 1344 PANTHER TMV RESISTANCE PROTEIN N-LIKE 927 1240 - -
Vvi1g812 1344 PANTHER TMV RESISTANCE PROTEIN N-LIKE 664 945 - -
Vvi1g812 1344 PRINTS Disease resistance protein signature 522 537 - -
Vvi1g812 1344 PRINTS Disease resistance protein signature 648 662 - -
Vvi1g812 1344 PRINTS Disease resistance protein signature 1063 1079 - -
Vvi1g812 1344 Pfam TIR domain 328 485 IPR000157 GO:0007165
Vvi1g812 1344 MobiDBLite consensus disorder prediction 1280 1315 - -
Vvi1g812 1344 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 499 662 IPR027417 -
Vvi1g812 1344 SUPERFAMILY Toll/Interleukin receptor TIR domain 323 464 IPR035897 -
Vvi1g812 1344 MobiDBLite consensus disorder prediction 1289 1315 - -
Vvi1g812 1344 SMART LRR_typ_2 60 82 IPR003591 -
Vvi1g812 1344 SMART LRR_typ_2 998 1021 IPR003591 -
Vvi1g812 1344 SMART LRR_typ_2 910 933 IPR003591 -
Vvi1g812 1344 SMART LRR_typ_2 886 909 IPR003591 -
Vvi1g812 1344 SMART LRR_bac_2 60 79 - -
Vvi1g812 1344 SMART LRR_bac_2 104 124 - -
Vvi1g812 1344 SMART LRR_bac_2 886 906 - -
Vvi1g812 1344 SMART LRR_bac_2 762 781 - -
Vvi1g812 1344 SMART LRR_bac_2 998 1017 - -
Vvi1g812 1344 CDD AAA 500 555 - -
Vvi1g812 1344 Gene3D Ribonuclease Inhibitor 3 223 IPR032675 -
Vvi1g812 1344 SUPERFAMILY L domain-like 763 1040 - -
Vvi1g812 1344 SUPERFAMILY L domain-like 13 209 - -
Vvi1g812 1344 ProSiteProfiles TIR domain profile. 326 489 IPR000157 GO:0007165
Vvi1g812 1344 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 325 588 IPR044974 GO:0006952
Vvi1g812 1344 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 664 945 IPR044974 GO:0006952
Vvi1g812 1344 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 60 299 IPR044974 GO:0006952
Vvi1g812 1344 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 612 661 IPR044974 GO:0006952
Vvi1g812 1344 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 927 1240 IPR044974 GO:0006952
Vvi1g812 1344 ProSiteProfiles Leucine-rich repeat profile. 129 151 IPR001611 GO:0005515
Vvi1g812 1344 Gene3D Ribonuclease Inhibitor 720 953 IPR032675 -
Vvi1g812 1344 Pfam NB-ARC domain 504 554 IPR002182 GO:0043531
Vvi1g812 1344 ProSiteProfiles Leucine-rich repeat profile. 62 84 IPR001611 GO:0005515
Vvi1g812 1344 ProSiteProfiles Leucine-rich repeat profile. 1000 1022 IPR001611 GO:0005515
Vvi1g812 1344 SMART till_3 327 461 IPR000157 GO:0007165
Vvi1g812 1344 Gene3D - 323 491 IPR035897 -
Vvi1g812 1344 Gene3D Ribonuclease Inhibitor 954 1152 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g812 - - - vvi:100263854 774.237
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g812 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017891 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 2 0 0 0 0 0 0 0 1 6