Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g814 ATGGTTTTGGAGCGTAGTGGAGGGAGGAAGCGGCGTGATGCGGCGACAGAGGATGAGGGGGGGAAGGCCGTGTCAACCAGCGGTGGCGGCAATGTTGCGAATGATTGTGATGGTAAGCGTTTAAAAACTTCGGGATCCAGAGATGAGAACCGTGATTCCAAAACTGAGGTAGAAACCAGTTCAGGCAAGCCTGTGGAACAAAACCCTCAATCAGCTGACCCACCTAAGCAAGATTTTATTCATGTACGAGCAAGAAGGGGTCAAGCTACTGATAGCCACAGTCTAGCTGAAAGAGCTAGAAGAGAAAAGATCAGCGAGAGGATGAAAATTCTCCAGGACTTGGTCCCTGGTTGTAATAAGGTTATTGGCAAAGCGCTGGTCCTTGATGAGATTATTAATTACATCCAATCATTACAGCGTCAGGTTGAGTTCCTGTCAATGAAACTTGAGGCTGTCAATTCGAGAATGAACTCTGGCATTGAAGGATTTCCTTCAAAGGATTTTGGTCAGCAAACATTTGATGCTGCTGGTGTGGCATATAGTTCACAAGCAACAAGAGAATATGGCCGGGCCTCATCGCCAGAATGGTTGCATATGCAGGTTGGTGGTGGTTTTGACCGAACATAA 627 46.89 MVLERSGGRKRRDAATEDEGGKAVSTSGGGNVANDCDGKRLKTSGSRDENRDSKTEVETSSGKPVEQNPQSADPPKQDFIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNSGIEGFPSKDFGQQTFDAAGVAYSSQATREYGRASSPEWLHMQVGGGFDRT* 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10146180 10150591 - Vvi1g814 Vvi1g814 770014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g814 208 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 86 156 IPR036638 GO:0046983
Vvi1g814 208 MobiDBLite consensus disorder prediction 40 59 - -
Vvi1g814 208 SMART finulus 94 144 IPR011598 GO:0046983
Vvi1g814 208 Coils Coil 135 155 - -
Vvi1g814 208 MobiDBLite consensus disorder prediction 60 74 - -
Vvi1g814 208 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 88 138 IPR011598 GO:0046983
Vvi1g814 208 MobiDBLite consensus disorder prediction 1 19 - -
Vvi1g814 208 Pfam Helix-loop-helix DNA-binding domain 92 139 IPR011598 GO:0046983
Vvi1g814 208 CDD bHLH_AtBPE_like 78 163 - -
Vvi1g814 208 Gene3D - 85 160 IPR036638 GO:0046983
Vvi1g814 208 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 6 208 IPR024097 GO:0006355
Vvi1g814 208 PANTHER BNAC05G07950D PROTEIN 6 208 - -
Vvi1g814 208 MobiDBLite consensus disorder prediction 1 76 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g814 Vvi17g472 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14536 PF00010 HLH 1.40E-08 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g814 - - vvi:100265665 414.075