Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi1g814 | ATGGTTTTGGAGCGTAGTGGAGGGAGGAAGCGGCGTGATGCGGCGACAGAGGATGAGGGGGGGAAGGCCGTGTCAACCAGCGGTGGCGGCAATGTTGCGAATGATTGTGATGGTAAGCGTTTAAAAACTTCGGGATCCAGAGATGAGAACCGTGATTCCAAAACTGAGGTAGAAACCAGTTCAGGCAAGCCTGTGGAACAAAACCCTCAATCAGCTGACCCACCTAAGCAAGATTTTATTCATGTACGAGCAAGAAGGGGTCAAGCTACTGATAGCCACAGTCTAGCTGAAAGAGCTAGAAGAGAAAAGATCAGCGAGAGGATGAAAATTCTCCAGGACTTGGTCCCTGGTTGTAATAAGGTTATTGGCAAAGCGCTGGTCCTTGATGAGATTATTAATTACATCCAATCATTACAGCGTCAGGTTGAGTTCCTGTCAATGAAACTTGAGGCTGTCAATTCGAGAATGAACTCTGGCATTGAAGGATTTCCTTCAAAGGATTTTGGTCAGCAAACATTTGATGCTGCTGGTGTGGCATATAGTTCACAAGCAACAAGAGAATATGGCCGGGCCTCATCGCCAGAATGGTTGCATATGCAGGTTGGTGGTGGTTTTGACCGAACATAA | 627 | 46.89 | MVLERSGGRKRRDAATEDEGGKAVSTSGGGNVANDCDGKRLKTSGSRDENRDSKTEVETSSGKPVEQNPQSADPPKQDFIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNSGIEGFPSKDFGQQTFDAAGVAYSSQATREYGRASSPEWLHMQVGGGFDRT* | 209 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 10146180 | 10150591 | - | Vvi1g814 | Vvi1g814 | 770014 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi1g814 | 208 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 86 | 156 | IPR036638 | GO:0046983 | |
Vvi1g814 | 208 | MobiDBLite | consensus disorder prediction | 40 | 59 | - | - | |
Vvi1g814 | 208 | SMART | finulus | 94 | 144 | IPR011598 | GO:0046983 | |
Vvi1g814 | 208 | Coils | Coil | 135 | 155 | - | - | |
Vvi1g814 | 208 | MobiDBLite | consensus disorder prediction | 60 | 74 | - | - | |
Vvi1g814 | 208 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 88 | 138 | IPR011598 | GO:0046983 | |
Vvi1g814 | 208 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Vvi1g814 | 208 | Pfam | Helix-loop-helix DNA-binding domain | 92 | 139 | IPR011598 | GO:0046983 | |
Vvi1g814 | 208 | CDD | bHLH_AtBPE_like | 78 | 163 | - | - | |
Vvi1g814 | 208 | Gene3D | - | 85 | 160 | IPR036638 | GO:0046983 | |
Vvi1g814 | 208 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 6 | 208 | IPR024097 | GO:0006355 | |
Vvi1g814 | 208 | PANTHER | BNAC05G07950D PROTEIN | 6 | 208 | - | - | |
Vvi1g814 | 208 | MobiDBLite | consensus disorder prediction | 1 | 76 | - | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14536 | PF00010 | HLH | 1.40E-08 | No_clan | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi1g814 | - | - | vvi:100265665 | 414.075 |