Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g818 ATGGGGTGTCGGCTACTATGGATTATTGTAGCGTTCACTCTCATATCGATGGGAGAAAGCAAGAAAAGTACAGGTGAATCGTGCCATCCTGATGACCTGATGGGTCTAATCAGTTTCAAGGCTGGAATTCGGATTGATACTTCAGGTCGGTTGGAGAGGTGGGTTGGCCGCAGTTGCTGCAAATGGGAGGGCATTTCCTATAACACTTCTCACCTCTCTTCAAAAAGCATTGGTAAGTTGTCCAAACTTGAGGAAATCATACTAAATCTTCATCACAACTATTTGAACGGTCATATGCCAGCCAAAATTGGTGAACTGCAGGTCCTGGAACAGCTTGATCTTTCGGAGAATCTCTTAAGCGGGAAAATTCCAGTTTCATTAACTAATATCACTACTGTTCAAGATATTGACTTGAGTAACAACTCCCTTGAGGGAGAGATCCCATTCCCCTCCTGCTCTGGCCAAATGCCCTTCCTCCGCTTTCTAGCCCTCCATCACAACCATCTGACTGGAAGGATACCCCCAGCTTTGGGATATCTGGTCTCCCTACAGAGATTATACCTAGAAAATAACAAGCTCAATGGGCCAATACCTTCCAGTTTGGGTAATCTCTCAGATTTGAGGGAGTTGTACCTCAGTGGCAACCGGTTATCAGGCCTAATACCAATAGCATTCAGTCGACTCTCTCAGCTTATCAACTTAAACCTTTCAAACAATTTGATTCGAGGGTTGCCTCATGAGATGTCTTCCCTCCAGAATCTTCAAACCCTCACTTTGTCATTCAACCCTTTAAACTTCTCCTCCATCCCCAAGTGGATGGCAGAATTACCATCAATTTCCCAGATTTACATGGCAGGATGTGGACTCCAAGGTGAAATTCCAGAATTTTTGCAGAGAAAACCAATACAGGAGCTGGACTTATCAGCCAACCATCTTACAGGAAGCATCCCATCATGGCTTGGTGGCCTGAGTCAGCTCTACTTGTTAAATCTCTCCAAGAATGCACTAGTTTCAGAGATTCCTGATTCAATCACAAGGTTGCATGAGTTGGGTGTACTTGATCTCCACTCTAACAAGCTAACAGGCTCCATAATTGAGAACATGCCTCCAGACAGAATGGTGAACAATATTCAATCATTAACTAGGAGAAGCAAAAGATTGAGGCTACAGTATCAACCATCCTTTCCTGAGAAAATTGATGACTGGAAAGCATGTAACAGTATACTTTTTTCCAAAACTTGTATATTCCATTAA 1254 43.22 MGCRLLWIIVAFTLISMGESKKSTGESCHPDDLMGLISFKAGIRIDTSGRLERWVGRSCCKWEGISYNTSHLSSKSIGKLSKLEEIILNLHHNYLNGHMPAKIGELQVLEQLDLSENLLSGKIPVSLTNITTVQDIDLSNNSLEGEIPFPSCSGQMPFLRFLALHHNHLTGRIPPALGYLVSLQRLYLENNKLNGPIPSSLGNLSDLRELYLSGNRLSGLIPIAFSRLSQLINLNLSNNLIRGLPHEMSSLQNLQTLTLSFNPLNFSSIPKWMAELPSISQIYMAGCGLQGEIPEFLQRKPIQELDLSANHLTGSIPSWLGGLSQLYLLNLSKNALVSEIPDSITRLHELGVLDLHSNKLTGSIIENMPPDRMVNNIQSLTRRSKRLRLQYQPSFPEKIDDWKACNSILFSKTCIFH* 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10197873 10200282 - Vvi1g818 Vvi1g818 770018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g818 417 Gene3D Ribonuclease Inhibitor 31 172 IPR032675 -
Vvi1g818 417 SUPERFAMILY L domain-like 60 365 - -
Vvi1g818 417 ProSiteProfiles Leucine-rich repeat profile. 230 251 IPR001611 GO:0005515
Vvi1g818 417 ProSiteProfiles Leucine-rich repeat profile. 206 227 IPR001611 GO:0005515
Vvi1g818 417 Pfam Leucine rich repeat N-terminal domain 30 66 IPR013210 -
Vvi1g818 417 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 76 342 IPR045273 -
Vvi1g818 417 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 31 72 IPR045273 -
Vvi1g818 417 Pfam Leucine Rich Repeat 182 204 IPR001611 GO:0005515
Vvi1g818 417 PANTHER - 76 342 - -
Vvi1g818 417 PANTHER - 31 72 - -
Vvi1g818 417 SMART LRR_typ_2 106 130 IPR003591 -
Vvi1g818 417 SMART LRR_typ_2 204 227 IPR003591 -
Vvi1g818 417 SMART LRR_typ_2 251 276 IPR003591 -
Vvi1g818 417 SMART LRR_typ_2 323 347 IPR003591 -
Vvi1g818 417 SMART LRR_typ_2 228 250 IPR003591 -
Vvi1g818 417 SMART LRR_typ_2 156 180 IPR003591 -
Vvi1g818 417 Pfam Leucine rich repeat 303 360 IPR001611 GO:0005515
Vvi1g818 417 Pfam Leucine rich repeat 207 264 IPR001611 GO:0005515
Vvi1g818 417 Gene3D Ribonuclease Inhibitor 173 266 IPR032675 -
Vvi1g818 417 Gene3D Ribonuclease Inhibitor 267 386 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g818 - - - vvi:104879912 530.406
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g818 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g02493 Cam05g2678 Cec05g2712 Cco05g2747 Clacu05g2680 Cmu05g2535 Cre05g2650 . . . . Lsi04g00493 Csa05g02392 Chy10g00954 Cme10g00472 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014248 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 23