Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g819 ATGGCTGTAACTACCTTTCCAACTGTGGACCAGTGTCAATCCATTGGCCGAGAAAAGCACACTGTGGTTGCGGACATGGATGGAACCTTGCTTATTGGCAGGAGCTCCTTTCCTTACTTTGCTTTGGTGGCTTTTGAGGGGGGAGGTGTTCTAAGGCTGCTCTTCCTGCTCTTGGCTTCACCACTCGCTGGACTTCTTTACTATTTTGTGTCGGAGTCTGCAGGAATCCAGATTCTCATCTTTGTAACCTTCGCTGGGATGAAGGTGTCAGACATTGAGTCAGTTGCACGTGCTGTGCTGCCCAAATTTTATTTGAGCGATCTCCATCCCGAGTCATGGCGGGTGTTCTCATCATGTGGAAAGCGTTGTGTTCTTACCGCAAACCCCAGGATAATGGTTGAGGCATTTCTGAAAGATTTTTTGGGAGCTGATTTAGTTTTGGGGACTGAGATAGCCACTTATAAGGGTAGGGCAACTGGGTTTGTTTGTGATCCAGGTGTACTTGTGGGCAAGAACAAGGCATATGCTCTCAACAAGACTTTTGGAGAGACCCAGCCTGAGATTGGGCTGGGTGATCGTCACACTGATTTTCCCTTCATGGCTTCATGCAAGGAGGGCTATATTGTGGCAGCCAAACCAGAGGTTAAGGCGGTAACAAGTGACAAGCTTCCCAAGCCCATCATCTTCCACGACAGCCGCCTCGTCCAAAAGCCAACTCCTCTCACGGCACTCCTCACCCTTCTCTGGATCCCCATAGGCTTCGCACTCGCATGCTTGCGAATCGCCGCTGGCTCACTCCTCCCCATGCGCATTCCTTTCCTTCTCAGGTTCTCAGCATTGTTTGCTGAACTGACTGACCAGCTTGTTCCAGTGGCTATGATGAACCGCATGAGCATGTTCCATGGAACAACAGCAAGAGGGTGGAAAGGGATGGACCCATTTTTCTTCTTCATGAATCCAAGCCCAGCGTATGAGGTAACGTTCTTGAACAAGCTGCCCCTGGAACTTACTTGCAGTTCGGGGAAATCTAGCCATGAGGTGGCCAACTACATGCAGAGGGTGATTGCTGCCACTCTTTCCTATGAATGCACTAGCTTTACCAGGAAAGATAAGTACCGAGCACTCGCTGGAAATGATGGGACCGTGCCCAAAAAACCTCTGCTATATCCCGACAAAGTCATGGGATGCTGA 1191 49.87 MAVTTFPTVDQCQSIGREKHTVVADMDGTLLIGRSSFPYFALVAFEGGGVLRLLFLLLASPLAGLLYYFVSESAGIQILIFVTFAGMKVSDIESVARAVLPKFYLSDLHPESWRVFSSCGKRCVLTANPRIMVEAFLKDFLGADLVLGTEIATYKGRATGFVCDPGVLVGKNKAYALNKTFGETQPEIGLGDRHTDFPFMASCKEGYIVAAKPEVKAVTSDKLPKPIIFHDSRLVQKPTPLTALLTLLWIPIGFALACLRIAAGSLLPMRIPFLLRFSALFAELTDQLVPVAMMNRMSMFHGTTARGWKGMDPFFFFMNPSPAYEVTFLNKLPLELTCSSGKSSHEVANYMQRVIAATLSYECTSFTRKDKYRALAGNDGTVPKKPLLYPDKVMGC* 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10214816 10216764 - Vvi1g819 Vvi1g819 770019

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g819 396 Gene3D - 114 223 IPR023214 -
Vvi1g819 396 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 274 382 - -
Vvi1g819 396 Pfam haloacid dehalogenase-like hydrolase 22 200 - -
Vvi1g819 396 PANTHER GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE RAM2 270 389 - -
Vvi1g819 396 PANTHER GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE RAM2 4 271 - -
Vvi1g819 396 SUPERFAMILY HAD-like 19 218 IPR036412 -
Vvi1g819 396 PANTHER ANCIENT UBIQUITOUS PROTEIN 270 389 - -
Vvi1g819 396 PANTHER ANCIENT UBIQUITOUS PROTEIN 4 271 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g819 - - - vvi:100243321 506.523
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g819 . . . . . . Bma14g01757 . . . . . . . . . . . . . . . . . Cla05g02492 Cam05g2677 Cec05g2711 Cco05g2746 Clacu05g2679 Cmu05g2534 Cre05g2649 Cone14ag0364 Cone15ag0400 . . Lsi04g00491 . . . . Blo11g00892 Bda07g01578 . Bpe11g01750 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003090 1 1 1 2 1 2 2 2 2 1 2 2 1 1 1 2 2 2 2 3 1 2 3 2 2 2 2 2 1 2 52