Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g821 ATGGGATCATCGGAATTGTCAGCTTTCTCGGGGGCGTCATTTTCATCGAGCATAGGAGATTCTGCGGAATTTGACGTGGAATTAACGTTGAATGACAGGCTAAAAGTCTTCAAAACTTCTCAATTTGATTGCAAGGGCTACATCACCTCAAAATGCCATGCCACGAATGAAAAGGAAATAAGGCACTTGTTCGCTTATCTGGTAGATTTAAAGAAGGCGTCTGCGGAGGAAATGCGTAAAAGCGTGTATGCTAATTATTCAGCCTTTATACGCACATCCAAGGAAATTTCAGATCTTGAAGGAGAGCTTCTTTCCATGAGAAATCTTTTATCAACTCAGGCAGCTCTAGTTCATGGTTTGGCTGAAGGAGTTGGGGTTGATTCCTTGTCTGCTGATTCCGATAGTTCAACAAAAGAGGACACATCTGATGTTACACATAGGGAACCTACTGACATGGAAAAATGGTTAATAGACTTTGTGGAGAATCTTGATGTTTTATTAGCTGAAAGGAGAGTGGATGAATCATTGACCGTCTTGGATGAAGGGGAAAGAACAGCACAAGAAGCTAGTAATAGGCAAACATTGAGCCCATCTGTTTTCTTATATCTGCAGGCTGCTATTAAAGAAGGAAGACAGAAGTTGGCTGATCAGCTTGCACATGTTGCCTGCCAAACTTCTACCTCTGGTCTTGAGCTTCGTTCAACTGTTCAAGCCCTAAAGAAACTGGGGGATGGCCCTCATGCTCATAAATTGCTGCTTAATTCTCACCATCATAATTTGGTGAACAATATGCGTATTCGCCCATCAAGCACTTCATATGGAGGAGCATTTACTGCTGCTCTTTCACATCATGTCTTCTCAATCATTGCCCAGGCAGCAAATGATTCCTTGTCAGTTTTTGGTGATGAGCCAGCATATGCATCTGAGCTTGTGACTTGGGCTGTCAAGGAGACCAAGACTTTTGCTCTTCTGGTAAAGAGACATGTTCTAGCCACTTCGGCAGCTGCAGGCGGTCTAAGACTTGCTGCAGAATGCGTTCAAACATGCTTGGGTCACTGTTCCTTGTTAGAAGCTCGCGGATTAGCCCTTTCTCCTATTCTATTGAAACTCTTCAGGCCTTGTATAGAAGAGGCACTGACTACCAACTTAAAAAGAATTGAACAGAGCAGCTCTGCTCTAGCTGTTGTAGATGATTGGACACTTGTCTTACCACCAGCTGGTATACGCCCTCTTGGTGCATGGACATCATCTCTTGGTAGTGCGATTGCATCACAGCTGAAGCTTTCAACCAGTGCTCACAGATTCAATTCAATGGTTCAGGAATTCTTTGAGGAGGTAGGGCCCCTTGAGAGCTTGCAGTTGGGTGGTTCCACATTGGAAGGTCTTTTACAAGTTTTCAACTCCTACATCAATTTGCTGATACATGCACTGCCAGGTACAATGGAAACTGAGGATAATCTTGGTGGCTCTGGGCATAAAATTGTTCGAATGGCAGAGACTGAATCTCAACAACTAGCTCTGCTGGCAAATGCATCAATGCTAGCAGATGAACTGCTTCCACGTGGTGCTATGAAGCTTTCACCCTTGCACCAGACTGGTAGAATGGACACCCCTGGAAGAGTTTCAGACAGGCAAAACCGATTCCCGGAGCATAGAGAATGGAAGAGGAAGCTTCAACGTGCTGTTGATCGATTGCGAGATAGCTTCTGCCGACAACACGCTCTTGAACTCATCTTCACGGAAGATGGTGAAATCCGTTTGACTGCAGAGATCTATACAAGCATGGATGGAAGTACAAATGAGCCTGAATGGTTCCCATCTCCAATATTTCAGGAATTTTTTGCAAAATTGACCCAAATAGCAAGCATTGCAACGGATATGTTTGTGGGAAGGGAAAGGTTTGCAACTATTCTACTGATGAGACTCACAGAGACAGTGATCTTGTGGCTTTCTGATGATCAAAGCTTTTGGGGAGAGATTGAGGCTGGGCCAAAGCCTTTGAGCACTTTTGGACTTCAACAGTTTTATTTGGATATGGAGTTTGTGATACTCTTTTCATCCCAAGGTCGTTACTTATCTCGTCATCTGCATCAAGTTATCAAAAACATCATAGCTAGAGCCATTGATGCATTTGCTGCTGCAACTGGAACAGACCCATATAGTGTGCTGCCAGAGGATCAATGGTTTGCTGAGGTTGCTCAAATAGCTATGAAGATGCTGACTGGAGAAGCCAACTTTGGAAATGTAGATCATGATGCAACCAGTCCCACTGCATCAATCTTATCTCATGGGAGTACCTAG 2301 43.98 MGSSELSAFSGASFSSSIGDSAEFDVELTLNDRLKVFKTSQFDCKGYITSKCHATNEKEIRHLFAYLVDLKKASAEEMRKSVYANYSAFIRTSKEISDLEGELLSMRNLLSTQAALVHGLAEGVGVDSLSADSDSSTKEDTSDVTHREPTDMEKWLIDFVENLDVLLAERRVDESLTVLDEGERTAQEASNRQTLSPSVFLYLQAAIKEGRQKLADQLAHVACQTSTSGLELRSTVQALKKLGDGPHAHKLLLNSHHHNLVNNMRIRPSSTSYGGAFTAALSHHVFSIIAQAANDSLSVFGDEPAYASELVTWAVKETKTFALLVKRHVLATSAAAGGLRLAAECVQTCLGHCSLLEARGLALSPILLKLFRPCIEEALTTNLKRIEQSSSALAVVDDWTLVLPPAGIRPLGAWTSSLGSAIASQLKLSTSAHRFNSMVQEFFEEVGPLESLQLGGSTLEGLLQVFNSYINLLIHALPGTMETEDNLGGSGHKIVRMAETESQQLALLANASMLADELLPRGAMKLSPLHQTGRMDTPGRVSDRQNRFPEHREWKRKLQRAVDRLRDSFCRQHALELIFTEDGEIRLTAEIYTSMDGSTNEPEWFPSPIFQEFFAKLTQIASIATDMFVGRERFATILLMRLTETVILWLSDDQSFWGEIEAGPKPLSTFGLQQFYLDMEFVILFSSQGRYLSRHLHQVIKNIIARAIDAFAAATGTDPYSVLPEDQWFAEVAQIAMKMLTGEANFGNVDHDATSPTASILSHGST* 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10246454 10250255 - Vvi1g821 Vvi1g821 770021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g821 766 MobiDBLite consensus disorder prediction 133 147 - -
Vvi1g821 766 Gene3D - 146 266 IPR042561 -
Vvi1g821 766 Pfam Vps51/Vps67 37 115 - -
Vvi1g821 766 Pfam Exocyst component 84 C-terminal 154 363 IPR032403 -
Vvi1g821 766 SUPERFAMILY Cullin repeat-like 147 379 IPR016159 -
Vvi1g821 766 MobiDBLite consensus disorder prediction 528 548 - -
Vvi1g821 766 MobiDBLite consensus disorder prediction 128 147 - -
Vvi1g821 766 PANTHER EXOCYST COMPLEX COMPONENT EXO84A 12 762 - -
Vvi1g821 766 Gene3D - 275 377 IPR042560 -
Vvi1g821 766 PANTHER EXOCYST COMPLEX COMPONENT 8 12 762 IPR033961 GO:0000145|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g821 K19986 EXOC8, SEC84; exocyst complex component 8 - vvi:100265642 1450.26
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g821 Blo01g00413 . . . Bpe13g00470 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag1384 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002109 2 2 2 1 1 2 3 2 2 2 2 2 3 2 3 3 2 2 3 2 2 2 2 2 2 2 2 3 2 2 64