Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g825 ATGAAGAGGCATGTTATCTCCTTTTCACGACATTGTTTTCAAGTCTTCTCTTATCATTCCCACTTGGATCCTGCTCTCAATCGTTTATCCTTCTTTAGAAGATGCTTTAGTGAAAAACTTTCTTCCTTTGATTCTACCACCAGAAATTTTCCTGATTATTCCCCAAAGAAACCTATCATTCAAGATTCTGAACTGGTTCATCGTATTTCCATTGCAATTAAGCAACGCCGCTCTGAGCCTCTCCGTCGTGTTCTAAAGCCCTATGAATCCAAATTCCGGGCTGATCACCTCATTTGGGTTCTTATGAACATTAAGAATGATTACAGATTGGTTTTAAGTTTCTTTGAGTGGGCCTGCCTACGCAGAGACCCATCACTGGAAGCACGTTGCATTGTTGCTCAAATAGCAACGGCTTCAAAGGATCTGAAAATGGCTCGCAAGCTCATCCAGGATTTTTGGGTCAATCCCAATTTGGATGTTGGTGTTTCTTTTGCAAGAAAACTTTTTGATAAGATGCTGAATTATGGGTTGCTCATCTCTGTTGACTCTTGTAATTTATTTATTTCTCATTTATCAGAGGATCTTGACGGGATCAAAATTGCTTTAAAGGGAGAGTGGGTTTTGAAGCTCATAGAGGAAATGCAAATAAAAGGATTGAAGCCAAACCCATATACTTACAATGGCGTAATCCTTCTTCTGTGTAAGACTGGTAAAGTAGCAGAAGCAGAAAGGGTCCTTAGGGAGATGATTAGTGAGGGAATTGCCCCAGATGGTGTCATCTACACAACATTAATTGATGGTTTCTGCAAGCTTGGGAATGTCTCATCGGCATATAGGCTGTTTGATGAAATGCAGAAGCGAAAAATTAGTCCTGACTTTATAACATATACTGCTGTTATATGTGGACTATGTCAAACAGGAAGGGTGATGGAAGCAGATAAGCTCTTCCATGAAATGGTCTGCAAGCGGTTGGAACCAGATGAAGTTACCTACACAGCACTTATTGATGGTTATTGCAAAGAAGGGAAGATGAAAGAAGCCTTTTCCCTTCACAACCAAATGCTTCAGATGGGACTGACCCCAAATATTGTCACTTACACTGCACTGGCTGATGGTCTTTGCAAATGTGGGGAGGTTGATACAGCAAATGAGCTTCTTCATGAGATGTGCAGAAAGGGTCTTGAACTGAATATCTACACTTACAACTCACTTGTTAATGGTCTCTGTAAAGCAGGAAATATAGATCAAGCAGTAAAGCTAATGAAAGATATGGAAGTGGCGGGGTTCCATCCTGATGCTGTTACTTATACTACTCTAATGGATGCTTATTGCAAGTCAAGAGAGATGGTTAGGGCCCATGAGCTCCTGCGTCAGATGCTGGATAGAGAGCTTCAACCCACAGTTGTTACATTCAATGTGCTAATGAATGGGTTTTGTATGTCAGGGATGCTAGAAGATGGTGAGAAGCTACTAAAATGGATGCTGGAGAAGGGTATTATGCCAAATGCCACCACCTACAATTCTCTTATAAAACAGTACTGCATTAGAAATAACATGCGTGCCACAACTGAAATTTATAGAGGAATGTGTGCCAAAGGAGTGGTGCCTGATGGCAACACCTATAACATTTTGATAAAAGGGCATTGTAAAGCAAGGAATATGAAAGAGGCATGGTTTTTACACAGAGACATGGTTGGGAAGGGATTTAATCTCACAGTTAGTTCCTACAATGCTCTCATCAAGGGTTTTTACAAGAGGAAGAAATTTTTGGAGGCAAGGGAACTGTTTGAGCAAATGAGAAGAGAAGGCCTGGTTGCAGATAGGGAAATATATAACATATTTGCTGATATAAATTATGATGAAGGGAAAATGGAGTTGACTCTTGAGCTTTGTGATGAAGCAATAGAGAAATGTCTTGTGGGTGACATCCAAACTAAGAACACATAA 1947 40.32 MKRHVISFSRHCFQVFSYHSHLDPALNRLSFFRRCFSEKLSSFDSTTRNFPDYSPKKPIIQDSELVHRISIAIKQRRSEPLRRVLKPYESKFRADHLIWVLMNIKNDYRLVLSFFEWACLRRDPSLEARCIVAQIATASKDLKMARKLIQDFWVNPNLDVGVSFARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKGEWVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELCDEAIEKCLVGDIQTKNT* 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10275244 10279439 + Vvi1g825 Vvi1g825 770025

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g825 648 Pfam PPR repeat family 572 613 IPR002885 -
Vvi1g825 648 Pfam PPR repeat family 466 514 IPR002885 -
Vvi1g825 648 Pfam PPR repeat family 256 305 IPR002885 -
Vvi1g825 648 Pfam PPR repeat family 326 375 IPR002885 -
Vvi1g825 648 Pfam PPR repeat family 397 445 IPR002885 -
Vvi1g825 648 Gene3D Tetratricopeptide repeat domain 284 356 IPR011990 GO:0005515
Vvi1g825 648 Gene3D Tetratricopeptide repeat domain 357 426 IPR011990 GO:0005515
Vvi1g825 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Vvi1g825 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 502 536 IPR002885 -
Vvi1g825 648 Pfam PPR repeat 532 565 IPR002885 -
Vvi1g825 648 Pfam PPR repeat 217 249 IPR002885 -
Vvi1g825 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Vvi1g825 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Vvi1g825 648 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 206 630 - -
Vvi1g825 648 Gene3D Tetratricopeptide repeat domain 102 278 IPR011990 GO:0005515
Vvi1g825 648 Gene3D Tetratricopeptide repeat domain 520 647 IPR011990 GO:0005515
Vvi1g825 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Vvi1g825 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Vvi1g825 648 SUPERFAMILY TPR-like 222 497 IPR011990 GO:0005515
Vvi1g825 648 Gene3D Tetratricopeptide repeat domain 427 519 IPR011990 GO:0005515
Vvi1g825 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Vvi1g825 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 572 606 IPR002885 -
Vvi1g825 648 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 206 630 - -
Vvi1g825 648 TIGRFAM PPR: pentatricopeptide repeat domain 399 433 IPR002885 -
Vvi1g825 648 TIGRFAM PPR: pentatricopeptide repeat domain 224 257 IPR002885 -
Vvi1g825 648 TIGRFAM PPR: pentatricopeptide repeat domain 540 571 IPR002885 -
Vvi1g825 648 TIGRFAM PPR: pentatricopeptide repeat domain 294 328 IPR002885 -
Vvi1g825 648 TIGRFAM PPR: pentatricopeptide repeat domain 364 397 IPR002885 -
Vvi1g825 648 TIGRFAM PPR: pentatricopeptide repeat domain 505 537 IPR002885 -
Vvi1g825 648 TIGRFAM PPR: pentatricopeptide repeat domain 469 503 IPR002885 -
Vvi1g825 648 TIGRFAM PPR: pentatricopeptide repeat domain 259 292 IPR002885 -
Vvi1g825 648 TIGRFAM PPR: pentatricopeptide repeat domain 434 467 IPR002885 -
Vvi1g825 648 TIGRFAM PPR: pentatricopeptide repeat domain 575 607 IPR002885 -
Vvi1g825 648 TIGRFAM PPR: pentatricopeptide repeat domain 329 363 IPR002885 -
Vvi1g825 648 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 74 202 - -
Vvi1g825 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 537 571 IPR002885 -
Vvi1g825 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Vvi1g825 648 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 74 202 - -
Vvi1g825 648 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g825 - - - cit:102622774 907.131
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g825 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010029 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 0 0 0 1 1 1 1 1 5 1 27