Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g835 ATGGAGGTCTTCAGCATTGCCAAAGCCGTCAGACTTCGAAGCCATCTGGACAGCTACCTGGTGGCTGACGACGACCAAGAGACGGTTCGCCAGAGCCGCAACGGCTCATCCCGTATAGCCAGATGGCTGGTCGAGGCCACCGGCCATCGCGTGGAGTTTAGATGTTTCCTCTTTCCCTCCTCTATAAATAGTCTCAATTCAATATTTCGTCGTCAACGCATTCCGAGTCTTGGACGCATAAGGCTTGGAGATTTCCTGCCCGTTTTCGTCCAGCTTTCGCTGTCTTCTTTGCTAAGAAACCAATTTAAAAAGCTGTTGGTGTGTATTGATCATATGGAGTTGTTCCGTACAGCCAAAGCCGTCACACTCCGGAGCCACCTAGACAAGTACCTGGTCGCTGACGACGACAAGGAAACGGTTCGCCAGAGCCGAAATGGTTTGTCCCGGAGAGCCAAATGGCTGGTCGAAGGCAGCGGCCATGTCATCCGCCTCAAGAGCTGCCACGGCCGCTACCTCACGGCCTCCGACACGGCCTATCTTCTAGGTATGACTGGGAAAAAGGTGACTCAGACGGTGCCGGGGAATACATCGGACGCGTTAATTGAGTGGGAGCCAATACGGGATGGGTTTCAGGTGAAGTTCAAGACTCGGGGTGGGAAATTTTTGCGAGCAAACGGAGGGACGCCACCGTGGAGAAACTCGGTTACTCACGATTACCCTAACAGCAGTGCAACACGGAACTGGATTCTTTGGGACGTGGAACCTGTGGAAGTGCCGGAAGTTGATCCAGTGGCGGACTACCTATCCTCGCTGTCGAGCTTTTCTTCGATTTCCGATGATCTCTTTGGTTCGGAGCCGCCGTCGCCGATGTCGATAACGGCCACCGAGCCATTCGGCCTGTCTTCGAAGAGGTTAGGGCTTATGAACACGCCAAAAGGCATATCATCGGAAAAACATGTGAATTACATTTACTTTTCGAAGTGGATTTGGAAGTGCTTTGAAAATGATAAAAGAATATCCCTCATTCCCAATCTTTTATCAGGGTTGGAAATTTGGACTGGTAAAAGATTAGTGGAGAGGATCACGAGCAATGGGCTTAGTGGCACTCCTTTGACCTATCCCAATTCAAAAAAAAAAAAGAGTGGTCCACGACACACTCTCACCAGCCCCCTCCCAAGTCCACCAAAAATAACTCCACTGGTCATTTCACTCATTGCATCACCCATTTCAATTTGGTGTCCGCGTCCCAGACGGTGTGATATCACATGCCTGGCGCTGACTGGGACTGCGGTTTCATCTCCTTATATCGCAATGGAGTTGTTTCACAACGCCAAGGCCGTTCGCCTCCGTAGCCATCACGACAAGTACCTGCTGGCCGACGACGACGAAGAGTCCGTTATCCAAGATCGGAGCGGCTCATCCAAGACTGCGCGATGGACCGTGGAGCTGGTCAAAGACGCCGACAACATCATCCGCCTCAGGAGCTGCTTTAACAAGTACCTTACCGCTTCCAACCAACCCTTCCTCTTGGGCATGACTGGTCGCAAAGTCCTCCAGACTCGCCCTGGGAGGCTTGACTCCTCCGTCGAGTGGGAACCCGTAAAAGAGGGCAACCGAATCAAGCTCAGAACTCGCTACGGTAATTTCCTCCGAGCCAACGGAGGGCTGCCGCCGTGGAGAAATTCGGTGACCCATGATGTTCCTCATAGAACGGCTACCCAAGATTGGATCCTTTGGGTTGTCGATATTGTTGAAATTCAGATTCAGTCTCCCAATGCTAAACCCCCGCTCCAATCCCTCTCCCATACGGATTCTTTTGCGAGCGCATCTGATTCGAGTTCGCCTTCCTCCGTATCATTACACCCTGCCAGTTTTTCAAGACAAGAGTCCAATGATTCCTTGGAGAATTCTCCCCCAAAAACTGAGGGCAGGACCATATACTACCATGTTGCTGATGACAATGGCAATGTGGACGACTCTGCGGGAGGGCACTATTTCACACTGAAGGAAAATGGGGTTTTTGAATTGACTCGCAGATTGGAGGAAGAGACGGGGTTAGAGGATATCATTGTCTGTTCTCGGAGTAACTTGAATGGAAAGCTTTATCCCCTGCGCTTGCAACTTCCTCCAAACAATGCAACTATGCATGTAATTGTAATCCAAGCATCCTCAAAAGCTGCAAGAAGTTTTGCAAAACCTGGGATCCCATGA 2211 50.84 MEVFSIAKAVRLRSHLDSYLVADDDQETVRQSRNGSSRIARWLVEATGHRVEFRCFLFPSSINSLNSIFRRQRIPSLGRIRLGDFLPVFVQLSLSSLLRNQFKKLLVCIDHMELFRTAKAVTLRSHLDKYLVADDDKETVRQSRNGLSRRAKWLVEGSGHVIRLKSCHGRYLTASDTAYLLGMTGKKVTQTVPGNTSDALIEWEPIRDGFQVKFKTRGGKFLRANGGTPPWRNSVTHDYPNSSATRNWILWDVEPVEVPEVDPVADYLSSLSSFSSISDDLFGSEPPSPMSITATEPFGLSSKRLGLMNTPKGISSEKHVNYIYFSKWIWKCFENDKRISLIPNLLSGLEIWTGKRLVERITSNGLSGTPLTYPNSKKKKSGPRHTLTSPLPSPPKITPLVISLIASPISIWCPRPRRCDITCLALTGTAVSSPYIAMELFHNAKAVRLRSHHDKYLLADDDEESVIQDRSGSSKTARWTVELVKDADNIIRLRSCFNKYLTASNQPFLLGMTGRKVLQTRPGRLDSSVEWEPVKEGNRIKLRTRYGNFLRANGGLPPWRNSVTHDVPHRTATQDWILWVVDIVEIQIQSPNAKPPLQSLSHTDSFASASDSSSPSSVSLHPASFSRQESNDSLENSPPKTEGRTIYYHVADDNGNVDDSAGGHYFTLKENGVFELTRRLEEETGLEDIIVCSRSNLNGKLYPLRLQLPPNNATMHVIVIQASSKAARSFAKPGIP* 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10398333 10407828 + Vvi1g835 Vvi1g835 770035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g835 736 MobiDBLite consensus disorder prediction 369 392 - -
Vvi1g835 736 MobiDBLite consensus disorder prediction 593 640 - -
Vvi1g835 736 Pfam Domain of unknown function (DUF569) 1 51 IPR007679 -
Vvi1g835 736 Pfam Domain of unknown function (DUF569) 438 579 IPR007679 -
Vvi1g835 736 Pfam Domain of unknown function (DUF569) 112 251 IPR007679 -
Vvi1g835 736 Gene3D - 446 566 - -
Vvi1g835 736 SUPERFAMILY Actin-crosslinking proteins 116 257 IPR008999 -
Vvi1g835 736 Gene3D - 116 257 - -
Vvi1g835 736 MobiDBLite consensus disorder prediction 593 642 - -
Vvi1g835 736 PANTHER ACTIN CROSS-LINKING PROTEIN (DUF569) 1 47 - -
Vvi1g835 736 PANTHER ACTIN CROSS-LINKING PROTEIN (DUF569) 93 263 - -
Vvi1g835 736 PANTHER ACTIN CROSS-LINKING PROTEIN (DUF569) 406 726 - -
Vvi1g835 736 SUPERFAMILY Actin-crosslinking proteins 6 49 IPR008999 -
Vvi1g835 736 PANTHER CROSS-LINKING PROTEIN, PUTATIVE (DUF569)-RELATED 93 263 - -
Vvi1g835 736 PANTHER CROSS-LINKING PROTEIN, PUTATIVE (DUF569)-RELATED 1 47 - -
Vvi1g835 736 PANTHER CROSS-LINKING PROTEIN, PUTATIVE (DUF569)-RELATED 406 726 - -
Vvi1g835 736 SUPERFAMILY Actin-crosslinking proteins 442 584 IPR008999 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g835 - - - vvi:100257102 580.867
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g835 Vvi14g1465 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g835 . Blo16g01138 Bda01g02249 Bda11g01241 Bpe13g00469 . . Bma15g00173 Cmo04g01696 Cmo18g01211 . Cma18g01191 . Car18g01098 . Cpe09g00140 Cpe01g01431 . . . . . . . . . . . . . . Cone13ag0988 Cone19ag0981 Cone8ag0625 Cone12ag0608 . Csa05g02398 Chy10g00958 Cme10g00467 Blo06g00892 . . Bda11g01241 . . Bma01g00078 Bma06g00656 . . . Cma04g01618 . Car04g01660 . . Cpe07g00237 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000505 4 4 2 5 3 3 5 3 3 4 3 3 5 4 4 5 3 4 5 3 4 4 3 4 3 3 3 6 5 2 112