Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g836 ATGGTTCTCGCAGCTGTAATAGCTCCACCTTCCCATCTTCCCCACGCCATCAGCAACAGCGACTCCTTCACCCATCACCGCCGCCTTCTCCTCTTCCTAAATTCATGCACCTGCATTTCTCAGCTCAAGCAACTTCACGCCCAGACAATTCGGACCACATCTTCCCACCATCCAAACACCTTCTTTCTTTACAGTCGGATTTTGCATTTCTCCTCCTTACATGATCTCCGTTACGCGTTTCGGGTTTTCCATCAAATTGAGAACCCCAATTCGTTCATGTGGAACGCCCTCATCAGGGCCTGTGCACGAAGCACTGACCGCAAACAACATGCCATTGCGCTTTATCACAGAATGTTGGAGCAAGGAAGTGTTATGCAAGATAAGCACACTTTCCCCTTTGTTCTCAAGGCTTGTGCTTACTTGTTTGCTCTATCAGAAGGGGAACAGATCCATGCCCAGATTTTGAAACTTGGATTTGATTCAGACGTTTATATTAATAACAGTTTGGTCCATTTCTATGCCACGTGCGACCGTTTGGACTTTGCAAAGGGGGTGTTTGATAGAATGTCTGAGAGAAGTTTGGTTTCATGGAACGTTGTGATTGACGCGTTTGTTCGATTCGGTGAGTTTGATGCTGCATTAAATTTATTCGGCGAGATGCAGAAGTTTTTTGAACCGGATGGGTATACCATTCAGAGTATCGCAAATGCTTGTGCTGGTATGGGGTCTTTGTCTTTGGGGATAGTTAATGATGTTTTGTTGAACACTTCCTTGGTGGATATGTATTGCAAATGTGGGTCATTAGAACTTGCTCTGCAACTCTTTCACAGAATGCCTAAGCGTGATGTAACCTCATGGAATTCGATGATTCTAGGATTCTCCACCCATGGCGAGGTGGCGGCCGCATTGGAATATTTTGGTTGCATGGTCAGAACGGAAAAGTTGATGCCCAATGCCATCACGTTTGTAGGTGTCTTGAGTGCGTGTAATCACGGAGGCTTGGTTAGTGAGGGCCGCAGGTATTTTGATGTGATGGTAACGGAGTACAAAATTAAACCTGAATTAGAGCACTATGGCTGCCTGGTAGATCTTCTTGCGCGTGCTGGGCTTATTGATGAAGCCTTAGATGTTGTGTCAAACATGCCCATGAGACCAGACTTAGTCATTTGGAGGAGTCTTCTGGACGCTTGTTGCAAGCAAAATGCAGGTGTTGAGCTAAGTGAAGAAATGGCCAGACGAGTCCTTGAGGCAGAAGGGGGTGTTTGTAGCGGTGTTTATGTGCTGCTGTCCCGAGTATATGCCTCAGCTAGCAGGTGGAACGATGTTGGGATGGTTAGGAAACTGATGACTGATAAGGGTGTAGTAAAAGAGCCTGGATGTAGTTCAATAGAGATAGACGGTGTCGCCCATGAATTTTTTGCAGGGGACACATCTCATCCTCAAACTGAAGAAATATATTCAGCTCTGGATGTGATTGAAGAGAGGGTGGAAAGGGTAGGGTATTCCCCCGACTCTTCACAAGCGCCCATGGTTGATGAGACCATTGATGGAAAACAATACTCACTTAGGCTGCATAGTGAGAGACTTGCCATTGCCTTTGGCCTATTGAAGACAAAACCAGGCATGCCCATTCGCATTTTTAAAAACCTTCGAGTCTGCAATAACTGTCACCAGGTGACTAAATTAATCTCTAGGGTATTTAACAGAGAGATAATTGTGAGAGATCGTATTAGATTCCATCACTTCAAAGATGGTGCCTGTTCCTGCATGGATTATTGGTGA 1782 45.45 MVLAAVIAPPSHLPHAISNSDSFTHHRRLLLFLNSCTCISQLKQLHAQTIRTTSSHHPNTFFLYSRILHFSSLHDLRYAFRVFHQIENPNSFMWNALIRACARSTDRKQHAIALYHRMLEQGSVMQDKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVFDRMSERSLVSWNVVIDAFVRFGEFDAALNLFGEMQKFFEPDGYTIQSIANACAGMGSLSLGIVNDVLLNTSLVDMYCKCGSLELALQLFHRMPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRRYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMRPDLVIWRSLLDACCKQNAGVELSEEMARRVLEAEGGVCSGVYVLLSRVYASASRWNDVGMVRKLMTDKGVVKEPGCSSIEIDGVAHEFFAGDTSHPQTEEIYSALDVIEERVERVGYSPDSSQAPMVDETIDGKQYSLRLHSERLAIAFGLLKTKPGMPIRIFKNLRVCNNCHQVTKLISRVFNREIIVRDRIRFHHFKDGACSCMDYW* 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10409283 10411107 - Vvi1g836 Vvi1g836 770036

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g836 593 Pfam E+ motif 470 490 IPR046849 -
Vvi1g836 593 Gene3D Tetratricopeptide repeat domain 258 471 IPR011990 GO:0005515
Vvi1g836 593 PANTHER BNAC04G18690D PROTEIN 22 535 - -
Vvi1g836 593 Gene3D Tetratricopeptide repeat domain 24 140 IPR011990 GO:0005515
Vvi1g836 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 125 IPR002885 -
Vvi1g836 593 Pfam DYW family of nucleic acid deaminases 500 593 IPR032867 GO:0008270
Vvi1g836 593 Pfam PPR repeat 357 382 IPR002885 -
Vvi1g836 593 Pfam PPR repeat 256 282 IPR002885 -
Vvi1g836 593 Pfam PPR repeat 195 222 IPR002885 -
Vvi1g836 593 Pfam PPR repeat 92 122 IPR002885 -
Vvi1g836 593 Pfam PPR repeat 167 192 IPR002885 -
Vvi1g836 593 Pfam PPR repeat 285 311 IPR002885 -
Vvi1g836 593 TIGRFAM PPR: pentatricopeptide repeat domain 256 283 IPR002885 -
Vvi1g836 593 TIGRFAM PPR: pentatricopeptide repeat domain 93 124 IPR002885 -
Vvi1g836 593 TIGRFAM PPR: pentatricopeptide repeat domain 195 222 IPR002885 -
Vvi1g836 593 Pfam E motif 403 464 IPR046848 -
Vvi1g836 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 223 IPR002885 -
Vvi1g836 593 Gene3D Tetratricopeptide repeat domain 143 246 IPR011990 GO:0005515
Vvi1g836 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Vvi1g836 593 PANTHER OS01G0913400 PROTEIN-RELATED 22 535 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g836 - - - vvi:100253661 1193.33
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g836 . . . . . . Bma14g01744 . Cmo04g01697 . . . . . . . Cpe01g01432 Bhi07g01635 . . . . . . Cla05g02489 . . . . . . Cone13ag0987 . . . Lsi04g00486 . Chy10g00959 Cme10g00466 . Blo11g00874 . . . . . . . . . Cma04g01619 . Car04g01661 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012298 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 0 0 1 1 1 1 1 1 1 27