Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g838 ATGGGAGCCAGCCACTCGTCTTCTTCAAAGTCATCTCGTGTCCTCACCTTCAATTCCTCAGCATCATGGAAGATACATTTTGAAGAAGCCAAAAGCACTGGCAAACTGATGGTTATCGATTTCTCGGCTACATGGTGTGGACCTTGCCGATTCATGGAACCCGTCATTAATGAGTTTGCTGAGAAATATACAGACGTGGAGTTCGTCAAGATTGATGTGGACGAGTTGTCGGATGTGGCTCAAGAATTTGGAGTGCAGGGAATGCCAACATTCTTACTGATCAAGAGAGGAACAGAAGTTGATAAAGTGGTGGGAGCCAAGAAGGAAGAACTCCAGAAGAAGATCGAGGCTCACAGGAAAAATTGA 366 45.36 MGASHSSSSKSSRVLTFNSSASWKIHFEEAKSTGKLMVIDFSATWCGPCRFMEPVINEFAEKYTDVEFVKIDVDELSDVAQEFGVQGMPTFLLIKRGTEVDKVVGAKKEELQKKIEAHRKN* 122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10422535 10423558 - Vvi1g838 Vvi1g838 770038

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g838 121 CDD TRX_family 26 116 - -
Vvi1g838 121 Pfam Thioredoxin 28 116 IPR013766 -
Vvi1g838 121 PANTHER THIOREDOXIN H2 4 120 - -
Vvi1g838 121 ProSitePatterns Thioredoxin family active site. 38 56 IPR017937 -
Vvi1g838 121 ProSiteProfiles Thioredoxin domain profile. 6 120 IPR013766 -
Vvi1g838 121 SUPERFAMILY Thioredoxin-like 26 119 IPR036249 -
Vvi1g838 121 Gene3D Glutaredoxin 2 121 - -
Vvi1g838 121 TIGRFAM thioredoxin: thioredoxin 27 117 IPR005746 GO:0015035
Vvi1g838 121 PRINTS Thioredoxin family signature 37 45 - -
Vvi1g838 121 PRINTS Thioredoxin family signature 45 54 - -
Vvi1g838 121 PRINTS Thioredoxin family signature 84 95 - -
Vvi1g838 121 PANTHER THIOREDOXIN 4 120 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g838 K03671 trxA; thioredoxin 1 - vvi:100246832 237.654
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g838 Vvi14g1471 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g838 . . . . . . . . Cmo04g01700 Cmo18g01209 . Cma18g01188 . Car18g01095 Sed08g1715 Cpe09g00142 Cpe01g01434 Bhi07g01632 Tan04g1133 Cmetu02g1744 Lac13g0267 Hepe10g1704 . . Cla05g02485 Cam05g2669 Cec05g2703 Cco05g2738 Clacu05g2671 Cmu05g2525 Cre05g2640 . Cone19ag0977 Cone8ag0624 . Lsi04g00482 Csa05g02401 Chy10g00963 Cme10g00463 . . . . . . . . . . . Cma04g01622 . Car04g01663 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009413 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 0 1 1 1 2 1 2 34