Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g840 ATGATCGCCGAAACCACACTTCGCTATACACAGCCGAAACGCAGCGTTTTCAAGCAAACCGAACTCAAGGGTTTTATCGAATTCTCCGTTCCGATGGATCCTGGGTCGTCGTCCTCGTCGTCCTCATCGTCGGCATTCCCTCTCCACATGGCGATGGCGGCGCTGGTCGGAGCATCGCTGATGGCTATCTCCGCCTTCTACGTTCACAAGCGCAGCGTCGATCAGGTTCTCCACCGCCTTATCGACATTCGCCGCGGAGGCCCTGCCAAGGCCGATGACCACGGCGGAGGAGAGCGAGGTGACTGCGACGACGCTGAGGCAGAGGTTGAGACTAATCGCAAAATGCGGGGACGGGGTCCATCTAGGTCTTTGGATAAGGCCGCACTTTGCTGTAGAAGAGTCTCGTCTTCCTTGCCCAATGCCGTTTTGGACAGTTCTTGGTTCGATGAAGAATCTAATTTTGATCCTCCAAAGCCTTTCTCCGTCCAAGATTTTTCCTCTTGTCACTTTGATAAACTCAACTCCATTCCCTCTGGACTGCCACCGCTTCAAACGGCTCCAAAAGACGAAGAGCATCTCTCTGCTAGCCACTCTGGTTCCAATGTGAGGGTGGCACCTGTTAGTAGGCTAATGACTCCAAGATCTTTGGGAGGCAATGCATTTGACAGTGCAGGGGATTCCGATGAGGAAGGAACGGAACTTGTAATTGGAGAGGACACTTTTTTCAACTATGCAGACACTAATCATTCAGTTGATTTTATGGGTATTAATGATTTAAATTCAAACATTCAGAATTCAACTCTCCTTCCCTTTAAAGTTGATAATGGCAACTGTTTTGAAGATCAGAAATGCAGAGGAACCAAAACTGAATCAAATGTTGGTGTGGATCTGCATGGCAATGGAAAGATGGACACAGCTTCAGGGAACATTTTGGGAACTAGGCCTATTTCTGCCAACACCATTTCACCACTGAGAACCATAGTGCAGGAATCAACAAATGTAGAAGAGGAGGAAGTACTGGAGATGATTCGTGGATGTTTAGATTTGCGGGATACCTACGTTTACAGGGAAAAAGTTGCTCCATGGGAGAAGGTAACAGAGCTAGGAAGTACTGCACTGGAGACAAGCAGTGATCCATTTCACTTTGACCTTGTTGAGACAACTACTCATCACTTCAGGATGGAAGATGGAGTTGTACATGTTTATGCGAGCAAAAATGACACTCTGGATCTTTTCCCTGTTGCAAGTTCAACAACATTTTTCACTGATATGCATCATATTCTAAGAATTATGGCTATTGGAAATGTTCGATCTTCATGTCATCATCGACTAAGATTTCTTGAGGAGAAATTCCGCCTTCATCTGTTAGTAAATGCAGATCGGGAGTTTCTGGCTCAGAAGAGTGCACCACATCGCGATTTCTACAACATTAGAAAGGTTGATACACATGTGCATCATTCTGCCTGCATGAACCAGAAGCACCTCCTGCGCTTCATCAAGTCTAAGCTCAGAAAAGAACCTGATGAGGTTGTCATATTCCGAGATGGGAAGTATCTCACACTTAGGGAAGTTTTTGAGAGTTTAGATTTGACAGGGCATGATCTGAATGTTGATCTATTGGATGTGCATGCTGACAAGAGTACCTTCCATAGATTTGACAAGTTCAATCTTAAGTATAATCCTTGCGGACAAAGCAGATTAAGAGAGATCTTCTTAAAGCAGGACAATCTTATCCAAGGGCGTTTTCTAGCAGAATTAACAAAACAAGTTCTATTGGATCTTGAAGCAAGCAAATACCAGATGGCTGAGTATAGAGTGTCAATATATGGAAGGAAACAAAGCGAATGGGATCAGCTGGCGAGTTGGTTCATTAACAATTCAATTTACAGTGAGAATGCTGTTTGGTTAATCCAGCTACCACGGCTATATAATGTTTACAAGCAAATGGGGATTGTTACAAACTTTCAGAATATTTTAGATAATGTGTTTATTCCTTTATTCGAAGTAACAATTGATCCAAGTTCTCATCCGCAACTACATGTATTCCTAAAGCAGGTTGTGGGTTTCGACATTGTAGATGATGAAAGTAAACCAGAAAGGCGTCCAACTAAACACATGCCCACACCTGCCGAATGGACTAATGAATTCAATCCTGCATACTCTTACTATGCTTATTACTGCTATGCTAACTTGTACACTCTCAACAAGCTTCGTGAGTCAAAAGGACTGCCAACAATCAAATTCCGGCCACACTGTGGAGAGGCAGGTGATGTAGACCATTTGGCTGCTGCATTCCTTCTCTGCCATAACATTTCTCATGGGATTAATCTGCGGAAATCCCCTGTTTTGCAGTATCTCTATTATCTTGCTCAGGTTGGACTGGCTATGTCACCACTGAGCAATAATTCGCTTTTCCTGGATTATGGTCGCAATCCATTTCCAATGTTCTTCCAGCGTGGCCTAAATGTTTCACTCTCAAGTGATGATCCTCTGCAAATCCATTTGACAAAAGAAGCCCTTGTGGAAGAATATAGTGTTGCAGCACAGGTGTGGAAACTCAGTTCCTGTGATCTATGTGAGATAGCAAGGAACTCTGTCTATCAATCTGGATTCTCACATATGGCAAAGATGCATTGGCTTGGTAGAAAATACTTCATGAGAGGCCCTGAAGGAAATGATATTCACAAGACAAATCTACCCAGCACAAGGATTGCCTTCCGTCATGAGACATGGAAGGAGGAGATGATGTATGTCTACGCTGGAAAGGCTAAGTTTCCTGAAGAGATAGACCTTGTATAA 2799 43.87 MIAETTLRYTQPKRSVFKQTELKGFIEFSVPMDPGSSSSSSSSSAFPLHMAMAALVGASLMAISAFYVHKRSVDQVLHRLIDIRRGGPAKADDHGGGERGDCDDAEAEVETNRKMRGRGPSRSLDKAALCCRRVSSSLPNAVLDSSWFDEESNFDPPKPFSVQDFSSCHFDKLNSIPSGLPPLQTAPKDEEHLSASHSGSNVRVAPVSRLMTPRSLGGNAFDSAGDSDEEGTELVIGEDTFFNYADTNHSVDFMGINDLNSNIQNSTLLPFKVDNGNCFEDQKCRGTKTESNVGVDLHGNGKMDTASGNILGTRPISANTISPLRTIVQESTNVEEEEVLEMIRGCLDLRDTYVYREKVAPWEKVTELGSTALETSSDPFHFDLVETTTHHFRMEDGVVHVYASKNDTLDLFPVASSTTFFTDMHHILRIMAIGNVRSSCHHRLRFLEEKFRLHLLVNADREFLAQKSAPHRDFYNIRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGKYLTLREVFESLDLTGHDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAELTKQVLLDLEASKYQMAEYRVSIYGRKQSEWDQLASWFINNSIYSENAVWLIQLPRLYNVYKQMGIVTNFQNILDNVFIPLFEVTIDPSSHPQLHVFLKQVVGFDIVDDESKPERRPTKHMPTPAEWTNEFNPAYSYYAYYCYANLYTLNKLRESKGLPTIKFRPHCGEAGDVDHLAAAFLLCHNISHGINLRKSPVLQYLYYLAQVGLAMSPLSNNSLFLDYGRNPFPMFFQRGLNVSLSSDDPLQIHLTKEALVEEYSVAAQVWKLSSCDLCEIARNSVYQSGFSHMAKMHWLGRKYFMRGPEGNDIHKTNLPSTRIAFRHETWKEEMMYVYAGKAKFPEEIDLV* 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10471859 10492671 - Vvi1g840 Vvi1g840 770040

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g840 932 Gene3D - 390 914 - -
Vvi1g840 932 PANTHER AMP DEAMINASE 45 930 IPR006329 GO:0003876|GO:0032264
Vvi1g840 932 SUPERFAMILY Metallo-dependent hydrolases 327 919 IPR032466 -
Vvi1g840 932 ProSitePatterns Adenosine and AMP deaminase signature. 824 830 IPR006650 GO:0009168|GO:0019239
Vvi1g840 932 MobiDBLite consensus disorder prediction 179 201 - -
Vvi1g840 932 Gene3D - 490 580 - -
Vvi1g840 932 TIGRFAM AMP_deaminase: AMP deaminase 388 917 IPR006329 GO:0003876|GO:0032264
Vvi1g840 932 PANTHER AMP DEAMINASE 45 930 - -
Vvi1g840 932 CDD AMPD 420 915 IPR006329 GO:0003876|GO:0032264
Vvi1g840 932 Pfam AMP deaminase 383 918 IPR006329 GO:0003876|GO:0032264
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g840 K01490 AMPD; AMP deaminase [EC:3.5.4.6] - vvi:100265525 1863.2
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g840 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0976 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030136 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 2