Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g843 ATGGGACATAATACCAACACTATGATGGAAGAAAACGAAAGAGACAAAGGAGGAGAAGTAGAAATATGGAGTTGGGGTGCAGGCACCGATGGGCAGCTAGGCACGACCAGGCTTGAAGATGAACACCTACCTCAACTCCTAGATCTCCCCCGTTTCTCCTCCGCCGGACCCATCTCTCTCCTTGCCTGCGGCGGCGCTCATGTTCTTGCCTTGACCACCGATGGAAAGGTGGTGACATGGGGAAGAGGCACATCTGGTCAACTGGGTCATGGGGACATGGTTAGCAGCTTGCAACCCAAGCATGTCAAGTTGTTGGAGAGCTTTGTTATGACTCATGTTTCTGCTGGATGGAGCCACTCTGGCTTTGTTTCAGACACTGGGTGCTTGTTCACTTGCGGGGATGGTTCATTTGGCCAGCTTGGGCATGGTGATTGCAAGTCACATTGCTCTCCAGTGAAAGTGTCATACTTTGATTCAAAGCATGTTGATCAGATAGCATGTGGTATGCGCCATTCACTAGTCTTGTTGAAAGGCACAGGTCTTTCAGGAGATCAAGTATATGGGTTTGGGTCTGGAAAGCGTGGTCAACTGGGTGTTTCCATGGATAATACCAGATCAATAAGTGTACCTCAGGCTACTGTTGGGCTTGAAGGTGTTGAAATCATTAGTATTGATGCCAATGGGGATCATAGTGCAGCATTATCTGCTAATGGGCATTTGTACACCTGGGGAAGAGGATTTGGTAGCACTTCAGATGTTCACTGCCCTCGGTGTCTTCCTTCATCTTTGTGCTTCACCCAAGTTGCTCTTGGATGGAATCACATGTTAGTATTAACAGGTGGAGGGGAAGTGTTTATGCTTGGTGGCAACCGCCATGGAGTCCTTGGTGATCCTCAAAAAGGAAGCCAGGTGAAGCATTTATCTGAAGAATCAAGAGAAGAAAATCTGGAGAAAGTACAGGGTCTTGATGGATTAAATGTTGTGCAGATTGCGGCTGGAGCTGAGCACTCAGCCCTAGTAACAGGCAATATTTTGGTGATAAAGACATGGGGTTGGGGTGAACACGGTCAGCTTGGCTTAGGAAATACATATGATCAAATTAGCCCCCAGGCAGTACGTCTAGGCCACAGGCTTCCAGGCCAGCATACCATGATCAAAGTATATTGTGGAAGTGGGTTTACATTTGCCATAAAAGCAGTTATCCCATCTCAGACCTGA 1218 47.62 MGHNTNTMMEENERDKGGEVEIWSWGAGTDGQLGTTRLEDEHLPQLLDLPRFSSAGPISLLACGGAHVLALTTDGKVVTWGRGTSGQLGHGDMVSSLQPKHVKLLESFVMTHVSAGWSHSGFVSDTGCLFTCGDGSFGQLGHGDCKSHCSPVKVSYFDSKHVDQIACGMRHSLVLLKGTGLSGDQVYGFGSGKRGQLGVSMDNTRSISVPQATVGLEGVEIISIDANGDHSAALSANGHLYTWGRGFGSTSDVHCPRCLPSSLCFTQVALGWNHMLVLTGGGEVFMLGGNRHGVLGDPQKGSQVKHLSEESREENLEKVQGLDGLNVVQIAAGAEHSALVTGNILVIKTWGWGEHGQLGLGNTYDQISPQAVRLGHRLPGQHTMIKVYCGSGFTFAIKAVIPSQT* 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10588293 10591940 - Vvi1g843 Vvi1g843 770043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g843 405 SUPERFAMILY RCC1/BLIP-II 21 373 IPR009091 -
Vvi1g843 405 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 345 400 IPR000408 -
Vvi1g843 405 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 184 237 IPR000408 -
Vvi1g843 405 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 20 74 IPR000408 -
Vvi1g843 405 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 75 126 IPR000408 -
Vvi1g843 405 Gene3D - 5 247 IPR009091 -
Vvi1g843 405 PRINTS Chromosome condensation regulator RCC1 signature 21 37 IPR000408 -
Vvi1g843 405 PRINTS Chromosome condensation regulator RCC1 signature 58 71 IPR000408 -
Vvi1g843 405 PRINTS Chromosome condensation regulator RCC1 signature 77 93 IPR000408 -
Vvi1g843 405 PRINTS Chromosome condensation regulator RCC1 signature 165 181 IPR000408 -
Vvi1g843 405 PRINTS Chromosome condensation regulator RCC1 signature 271 289 IPR000408 -
Vvi1g843 405 PRINTS Chromosome condensation regulator RCC1 signature 340 361 IPR000408 -
Vvi1g843 405 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 282 343 IPR000408 -
Vvi1g843 405 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 127 178 IPR000408 -
Vvi1g843 405 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 22 395 - -
Vvi1g843 405 PANTHER OS01G0777800 PROTEIN 22 395 - -
Vvi1g843 405 Gene3D - 248 400 IPR009091 -
Vvi1g843 405 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 165 175 IPR000408 -
Vvi1g843 405 Pfam Regulator of chromosome condensation (RCC1) repeat 282 339 IPR000408 -
Vvi1g843 405 Pfam Regulator of chromosome condensation (RCC1) repeat 74 122 IPR000408 -
Vvi1g843 405 Pfam Regulator of chromosome condensation (RCC1) repeat 127 175 IPR000408 -
Vvi1g843 405 Pfam Regulator of chromosome condensation (RCC1) repeat 349 397 IPR000408 -
Vvi1g843 405 Pfam Regulator of chromosome condensation (RCC1) repeat 22 71 IPR000408 -
Vvi1g843 405 Pfam Regulator of chromosome condensation (RCC1) repeat 185 234 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g843 - - - vvi:100246710 811.601
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g843 . . . . . . Bma14g01622 . . Cmo18g01205 . Cma18g01183 . Car18g01091 . Cpe09g00147 . Bhi07g01619 . . . . . . Cla05g02481 Cam05g2665 Cec05g2699 Cco05g2734 Clacu05g2667 Cmu05g2521 Cre05g2636 Cone13ag0985 . . . Lsi04g00471 Csa05g02408 Chy10g00969 Cme10g00457 . Blo11g00760 Bda07g01457 . Bpe11g01629 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008999 1 4 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34