Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g846 ATGGACGGTAGGAAACTGTATGGTGGCGGTTCAAACATGGCCGTTTTACTTCGTAAGGAAACACTTCCCTCTCCTTCAGAGCTTCTTGAATCTTTCTGGATTCCCGATTCTTCCACTACTTTCCATGGTTCTAAATCCGTCGTAAACTTTGAAGGTGTTGGTGGAGACGACACAAAAGATAGGCCATTCTTCCAAACACTCCATGAGGAAGAAAATGGCGATGAGGATTTTGAGGGGTGCTTTCATCGACCCGAGAAGAAAAGGCGGCTCACAGCCGGTCAAGTTCAGTTTCTTGAGAGGAATTTTGAGGTGGAGAATAAGCTTGAACCAGAGAGGAAGAACCAGCTTGCAAAGGAGCTTGGGCTGCAGCCACGGCAGGTTGCAATATGGTTTCAAAACAGACGAGCCCGGTTCAAGACCAAACAGCTGGAGAAGGACTATGATTCTTTGAAAGCTAGCTATGATAGCCTCAAGGCTGACTATGATTGCATCCTGAAAGAGAAGGAAAAACTTAAAACTGAGCTCCTTTTGCTGACGGACAAAGCGCTGATCGGGGAGAAAGAAGGGGAGAAAACAAAAGCATTGGAGAACATCAGTCCATCACATGCAGAATCTCAGAAAGCAATTCCCAATAGAGTTTCTGAACATGTACCACCCAATGCACCAATCCTCTTCTGTAAACAGGAAGATGCAAGTTCAGCCAAAAGTGATGTTTTTGATTCGGACAGCCCACTCTACACTGATGGGAATCATTCTTCGCTGTTGGAGCCAGCAGATTCCTCTCAGATCTTTGAGCCAGATCAGTCGGAGTTCTCTCAAGACGAAGAAGATAACCTAAGCAAGAGCCTCATCCCTCCACTATGCTTCCCAAAGCTCGAAGACTGCTCTTACCCTGACCCACCTGCAAATGCTTGTAATCTTGGATTGCCGGCTGAAGAGCAGCCCTTTTGGTTCTGGTCTTACTGA 966 46.48 MDGRKLYGGGSNMAVLLRKETLPSPSELLESFWIPDSSTTFHGSKSVVNFEGVGGDDTKDRPFFQTLHEEENGDEDFEGCFHRPEKKRRLTAGQVQFLERNFEVENKLEPERKNQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYDSLKASYDSLKADYDCILKEKEKLKTELLLLTDKALIGEKEGEKTKALENISPSHAESQKAIPNRVSEHVPPNAPILFCKQEDASSAKSDVFDSDSPLYTDGNHSSLLEPADSSQIFEPDQSEFSQDEEDNLSKSLIPPLCFPKLEDCSYPDPPANACNLGLPAEEQPFWFWSY* 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10605110 10607758 - Vvi1g846 Vvi1g846 770046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g846 321 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Vvi1g846 321 Coils Coil 140 174 - -
Vvi1g846 321 SMART HOX_1 84 145 IPR001356 GO:0003677
Vvi1g846 321 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Vvi1g846 321 PRINTS Lambda-repressor HTH signature 112 121 IPR000047 GO:0003677
Vvi1g846 321 PRINTS Lambda-repressor HTH signature 121 137 IPR000047 GO:0003677
Vvi1g846 321 Gene3D - 80 148 - -
Vvi1g846 321 SUPERFAMILY Homeodomain-like 76 143 IPR009057 -
Vvi1g846 321 CDD homeodomain 86 142 IPR001356 GO:0003677
Vvi1g846 321 Pfam Homeobox associated leucine zipper 141 181 IPR003106 GO:0006355|GO:0043565
Vvi1g846 321 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 1 321 - -
Vvi1g846 321 MobiDBLite consensus disorder prediction 194 216 - -
Vvi1g846 321 Pfam Homeodomain 86 139 IPR001356 GO:0003677
Vvi1g846 321 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 321 IPR045224 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g846 - - K09338 vvi:100241577 642.499
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g846 Vvi17g499 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g846 . Blo16g01135 . Bda11g01236 Bpe13g00467 . . . . . . . . . Sed04g0677 . . Bhi07g01613 Tan04g1126 Cmetu10g1215 Lac13g0276 Hepe10g1711 . . Cla05g02477 Cam05g2661 Cec05g2695 Cco05g2730 Clacu05g2663 Cmu05g2517 Cre05g2632 . . Cone6ag0614 Cone9ag0617 Lsi04g00464 Csa05g02414 Chy10g00972 Cme10g00452 . . . Bda11g01236 . . Bma01g00080 Bma06g00658 . . . . . Car04g01668 Car15g00313 Cpe13g00941 . . . . . . . . . . . . . . . . . Chy09g00265 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003231 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14537 PF00046 Homeodomain 1.70E-15 CL0123 Vvi TF