Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g848 ATGTCGGGATATTCGAAAGAGGAGGTGATTGGGAAGAATGGTAGGGCATTTCAGGGACCAGGGACTAGTAGGAGATCGATAACCGAAATTCAGGAGGCAATTCAAGAAGAGAGGACAATTCAAACTATTTTATTGAATTATCGTAAAGATGGAACCCCCATTTGGATGTTATTTCACATGAGTCCTGTTTTTAGTAAGGAAGATGGCAGGGTGATACACTTTGTTGCAGTTCAAGTGCCAATGTCAAGGAAGCCAAGGTGGTCCGGAAGCGGGCCTGGAAGAGATGGAGTATGCGAGGACGGGTGTAGGTCACGTGATATTGTATTCGGGTCTTGTAGGAGGGAGGTGTGCTCGGATTCAGTGTTGGAGCTGGAGCATGTTTTGGCTTTCGAGTCGCTGTTTGATTCAGATAACAGAGACGATGAAGAGCCTCGGGAAGCAAGTGATCAAGAGAAGAGAAGGGCTGCAGCCGCTGTTAACAATATCTTGTCTTTGCTAACACACTATAGTGAGTTAACTGGCAAATTGGTCTGCGAAAAGAGATGCACCTTATCTGGAATTGGCCTCCTTGGTGCTTCCTTAATTATATCTCTTGGTAGAATCAAACAAAGCTTTGTATTGACTGATCCCCATTTACCTGAGATGCCAATCGTTTATGCAAGTGATGCCTTCTTAAAATTGACAGGATATGCTAGACATGAAGTGTTGGGATGCCAGTGTATGTTTTTGAGTGGTGTGGATACGGATCCATCAACTCTATTGCAGGTAAAGGAAAGCATCCAAACTGAGCAAGCATGCACAGTACGTATCTTAAATTACAGGAAGGATAGGAGTTCGTTTTGGAATCTTCTTCACATATCTCCTGTTCGGAATGCCTCTGGCAAGATAGCATACTCGGTGTGGGTTCAGATGGAAGAAGGTTGTGGTTACCAGGATGCTCAAGGGCTGAGCCCTGAGATGAGGCAGCGTAGCACGGTTGGTGCGGTCAAGGTTGCAGTGAGGAGTTCATCAATGGGTGCTGGCCCTTCTAAGTCATAG 1038 45.57 MSGYSKEEVIGKNGRAFQGPGTSRRSITEIQEAIQEERTIQTILLNYRKDGTPIWMLFHMSPVFSKEDGRVIHFVAVQVPMSRKPRWSGSGPGRDGVCEDGCRSRDIVFGSCRREVCSDSVLELEHVLAFESLFDSDNRDDEEPREASDQEKRRAAAAVNNILSLLTHYSELTGKLVCEKRCTLSGIGLLGASLIISLGRIKQSFVLTDPHLPEMPIVYASDAFLKLTGYARHEVLGCQCMFLSGVDTDPSTLLQVKESIQTEQACTVRILNYRKDRSSFWNLLHISPVRNASGKIAYSVWVQMEEGCGYQDAQGLSPEMRQRSTVGAVKVAVRSSSMGAGPSKS* 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10683527 10690793 - Vvi1g848 Vvi1g848 770048

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g848 345 CDD PAS 217 305 IPR000014 -
Vvi1g848 345 MobiDBLite consensus disorder prediction 1 25 - -
Vvi1g848 345 SUPERFAMILY PYP-like sensor domain (PAS domain) 205 303 IPR035965 -
Vvi1g848 345 ProSiteProfiles PAS repeat profile. 217 237 IPR000014 -
Vvi1g848 345 SUPERFAMILY PYP-like sensor domain (PAS domain) 1 78 IPR035965 -
Vvi1g848 345 ProSiteProfiles PAS repeat profile. 1 37 IPR000014 -
Vvi1g848 345 Gene3D PAS domain 204 337 - -
Vvi1g848 345 Gene3D PAS domain 1 88 - -
Vvi1g848 345 Pfam PAS domain 1 79 IPR000014 -
Vvi1g848 345 Pfam PAS domain 204 300 IPR000014 -
Vvi1g848 345 PANTHER PROTEIN TWIN LOV 1 3 84 - -
Vvi1g848 345 PANTHER PROTEIN TWIN LOV 1 73 344 - -
Vvi1g848 345 TIGRFAM sensory_box: PAS domain S-box protein 1 75 IPR000014 -
Vvi1g848 345 TIGRFAM sensory_box: PAS domain S-box protein 217 299 IPR000014 -
Vvi1g848 345 PANTHER PROTEIN TWIN LOV 1 3 84 - -
Vvi1g848 345 PANTHER PROTEIN TWIN LOV 1 73 344 - -
Vvi1g848 345 SMART pac_2 41 84 IPR001610 -
Vvi1g848 345 SMART pac_2 267 306 IPR001610 -
Vvi1g848 345 CDD PAS 1 81 IPR000014 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g848 - - - vvi:100260420 677.937
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g848 . . . . . . . . Cmo04g01708 . . . . . . . Cpe01g01442 Bhi07g01608 . . . . . . . . . . . . . Cone13ag0984 Cone19ag0974 . . Lsi04g00459 Csa05g02417 Chy10g00974 Cme10g00448 . . . . . . . . . . . Cma04g01630 . Car04g01670 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013588 0 4 0 0 0 0 2 0 0 1 0 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 2 1 1 25