Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g85 ATGTTTTTACATCAATCATATCCAATATCTATCAACGAGTGGATATTCATACTCATAGTATTGTTGCAGCAATTTGTAGATTTGAGAGAAAAGAGAGAGATCATGGTCGGCCTAGAAACAGAAATAGCTGGGGCGCTTGTAGAGGGTTCTGTGACCTTTCTTCTGCAAAAAATTGATGCTATTGCAACCAGAGAATGGAATTTGAAGCAAATAAATAGGATGAAAGTCCAAGATATAGGACGAGAGCTGGGGAGCATTGAGGCCCTCCTACAAGCTGATTCAAAGGAAGATCCTGATCACCAATACGCAGTCTGGATTCAACAGGTCCGTGATCAAGCTAATGCCATCGAGGATGTTCTTGACCGGGTAAGGCTCGCTGAAGGTTCAGTGTGGTGGGGCTTGAAAATGCGTTACTCCACCGAAGAGTTGATACAGGAGATTAACACGAGTCTGCAAAACATTCAGCGGACAAGGGAGAGGTATCACAGCATGCGCTCCACTTCAACCCATACTGGCTACAGCACATACTTTCCTGTGAGAGCGGCTCCTTTGTTCACTGGCGATGTTGACACTGTGGGCATTGAGGAGCCTAGAAATCAGCTGGTTTCTTGGGCCTTGGAACCGAGGCAGAGGCTTGAGGTGATGTTCGTGGTGGGGATGGCTGGACTGGGGAAGACCACTCTTGTCAACAGTGTGTATGAGAGGGTGAAGCAGCACTTTGATTGCCATGTCTGGATCACTGCTTCAAAGTCCAAAAACAAACTCGATGTCTTATGCACCTTGTTAGTAGAGGGATTTGGGTGTTCAATTACACAGAGGGCCGACAAGGTTGCTCAGGCGCGTAACCTGCGGAAATTTCTCCACAACAAACGGTATGTTATAGTTGTTGATGATTTATGGGAAAAAAATGTGTGGGAGTCCATTAAACTTGTATTGCCAGATGATGGTAACAACAGTAGAATAATTATCACTACAAGGAGAGGCGACATAGCTAATTCTTGCAGAGATGATGATTCTATTCATATCCACAAGCTCCAGCCACTGTCCTGGGAAAATGCTAAGCAGCTCTTCCATACTAAAGCTTTCTCAAAAAACGGCGGATGTCCTTCAGGCTTGGAGGAAATTTCCAAATCCATCTTACACAAATGCGATGGATTGCCACTTGGGATTATTGAGATCGGCAAACTGTTGTCAAGAAAGGCTCAAACTGCATATGAGTGGGACAAGTTACACAATAGCCTTGAATCTGAATTGAGAAGCAGTGGTGGCCTTTCAAATATGATGAGTGCGCTGTCCGCAAGTTACGAGGATTTGCCTTACCATCTCAAGTATTGCTTCTTATACTTGAGCATGTTTCCCGAGAATAAACCAGTTAAGCGAAGAAGACTGATTCGGCTATGGATAGCTGAGGGATTTGTAAGAGAGGAGAGAGGCAAAACTCTTGAAGAGGTTGGGGAAGAGTACCTGAATGAGCTGATTGACAGGAATATGTTGAAGGCAAATGAAATGGATTTTGATGGAAGGCCAAAAAGTATGGGAGTTCATAGTCTCATGCATAAGATGATTCTCCTTGTCTCACATGAGGATAACTTTTGTTCTGTTTGCACAGGAGCAGAAGGGAACTTGACTGAGAAAACCCGGCGCCTATCCATCCAGAAGGAAGGCTTTGATGTGCCTCAGGATGAGCCCTTGCCCTGTGTTCGAACTTTTTTCAGTTTCAGTACAGGTATGGTAAACATTGGTTCGAATTTCGAGCTATTAATGGTTTTGGACATGGAAGGCACTCCTTTGGTAAACTTTCCAAGTGCCATTACAGATCTTGTGCTATTGAGGTATTTGAGTTTGAGGAATACAAATATAAGGAGCATCCCCTGGTCCCTGAGTAAACTACGGCACCTTGAGACCTTGGATCTTAAGCAGACGCTGGTAACAAAGGTACCCAAAACAGTCCTAAAACTTAAGAAACTTCGCCACTTGCTGGTTTATCGCACCAAAGAGGATCGGCGCATTGAAGAACCTACAAAAGCTTTCATTTGTAAAGGCAAGAAGCTAGGCATTCTGGATGCAATGGATCCGCCGCGTCTTCTTCAACGCCTCTATCTCAAAGGGCCCTTGCAAAGGTTTCCAAGGTGGGTTTCTTCTCTACATGACCTGGTGAGAATACGCCTAAAATGGTCTTCACTCACAGAAGACAACCCAATTGCAGCCCTTGAAGATCTCCCAAACTTGATGGAGCTGCAGTTACTTGATGCATACACTGGAGACCAGTTCGATTTCAACAAGGGAAAATTTCAGAAGCTTAAGATATTAGACCTTGAGAGATTGGAACGACTGAAGTTTATCATAATGGAAGATGGCACATTGCCTTGCCTACAAAAGCTGATCATAAGGCATTGCAAGGAGCTGAAGCAGGTTCCCATAGGTATTGACAACCTCAATCATCTCAATGAACTGTTTCTCTGCGATATGCCTGAGAAATTCGTGGCCCAGCTAAGGAAAAAAGTCGGTGAACTTCGCCATCTGCTTCATCGTATTTCGTATATTCTCTGGATTCAAGATGTTCGGGAAGAAGCTTATGACATTGAGGATGTCATTGACCTGCTCAGTCTTGATATGACTCAAGAATCAGCCCGGCGCCGCTGGAAAATGAGACACTCCATCAACGACTTGATAGAGAAGATTAACAGGAGTCTGGAAAACAGTCAGAAGATACAGGAGAGGTATCAGAAGCTGGTCTCCACTCCAACCAATGCTGTCAACAACACATATCCTCATGAGAAACTAGCTTCTTTGTTCCTTGGCAACGTTGACACTGTGGGCATGGAGGAGCCCCGAAATAAGCTCGTTTCTTGGGTGTTGGAGCCGAAGCAGAGACTTAAGATGATGTTCGTGGTGGGGATGGCTGGATTGGGGAAGACGACTCTCGTCCACAGCGTGTATGAGAGGGTGAAGCAGCGCTTTGATTCCCATGTCTGGATCACTGCTTCAGAGTCCAAAACCAAACTCGAAATCTTATTGAGCTTGTTAGCAAAGAAATTTGGCTGTTCAATTACACCGGGGGCAGACATGGTTGCTGTAACTCACGAACTGCAAAAATTTCTCCGCAACAAACGGTATGTTATGGTTATTGATGATTTTTGTGTAAAAGATGTGTGGGAATCCATTAGACTTGCATTACCAGATGGTAACAACAGTAGAATAATTATCACTACAAGGAGAGGCGACATAGCTAATTCTTGCAGAGATGATGATTCTATTCATATCCACAAGCTCCAGCCACTGTCTTGGGAAAATGCTAAGCGGCTCTTCCATACTAAAGCTTTCTCAAGAAATAGCAGATGTCCTTCAGGCTTGGAGGAACTGTCCCAATCCATCTTACAGAAATGTGATGGATTACCACTTGGGATTATTGAGATTGGCAGACTCTTGAAGAGTAAGGCTCAAACTGCATATGAGTGGCAAAAGTTACACGATAACCTTGAATCTGAATTGAGAAGCGGTGGTGGCCTTTCCAATATGATGAAAGTGCTGTCTACAAGTTACAAAGATTTACCTTACCATCTCAAGTGTTGTTTCTTGTACATGGGCATCTTTCCTGAAAATAAACCAGTTAAGCGAAGAAGACTGGTTCGGCTGTGGATAGCTGAGAGATTTGTAACAGAGGAGAGAGGCAAAACTCTTGAAGAGGTTGGGGAAGAGTACCTGAATGAGCTGATTGACAGGAGTCTGATACAGGCAAATGAAATGGATTTTGATGGAAGGCCCAAAAGTGTAGGAGTTCATTGTCTCATGCATAAGATGATTCTCTCACTCTCACATGAGGAGAACTTTTGTACTCTACATTGTACAGGAGCAAAAAAGAACTTTACTGAGAAAACCCGGCGCCTATCTATCCAGAAGAAAGACTTTGATATTTCTCAGGAGTTGCCCCGTCTTCGAACCTTCTTCAGTTTCAGTACAGGTAGGGTAAACATTCGTTGGATTAATTTCCTACGACTGAGGGTTTTGGATATACAGGGCACTTCATTGGGAGCCTTCCCGAGTGTAACAACAGATCTTCTCCTCTTGAGGTACTTGAGTTTGAGGAATACAGATATAAGAAGCATCCCCGAAACCGTGAGTAACCTAAAGCAGCTTGAGACCTTGGATCTCAAGCAAACTCGGGTGAAAAAGCTACCCAAATCAGTCCTACAACTTGGGGAACTTCGCCATTTGCTGGTTTGTCGCTACAATAATGGACGTTGCATTGAAGAACCTACAAAAGCTATCATTTGTAAAGGCGAGATGGCAGTACAGAATGATAGAGGAGCTCCAACATTTGACACAGTTGAGGAAGCTGGGCATTGTAGCACTAGAAAAAGAAGATGGAAAGAGCTTGTGCGACTCAATTGA 4392 43.99 MFLHQSYPISINEWIFILIVLLQQFVDLREKREIMVGLETEIAGALVEGSVTFLLQKIDAIATREWNLKQINRMKVQDIGRELGSIEALLQADSKEDPDHQYAVWIQQVRDQANAIEDVLDRVRLAEGSVWWGLKMRYSTEELIQEINTSLQNIQRTRERYHSMRSTSTHTGYSTYFPVRAAPLFTGDVDTVGIEEPRNQLVSWALEPRQRLEVMFVVGMAGLGKTTLVNSVYERVKQHFDCHVWITASKSKNKLDVLCTLLVEGFGCSITQRADKVAQARNLRKFLHNKRYVIVVDDLWEKNVWESIKLVLPDDGNNSRIIITTRRGDIANSCRDDDSIHIHKLQPLSWENAKQLFHTKAFSKNGGCPSGLEEISKSILHKCDGLPLGIIEIGKLLSRKAQTAYEWDKLHNSLESELRSSGGLSNMMSALSASYEDLPYHLKYCFLYLSMFPENKPVKRRRLIRLWIAEGFVREERGKTLEEVGEEYLNELIDRNMLKANEMDFDGRPKSMGVHSLMHKMILLVSHEDNFCSVCTGAEGNLTEKTRRLSIQKEGFDVPQDEPLPCVRTFFSFSTGMVNIGSNFELLMVLDMEGTPLVNFPSAITDLVLLRYLSLRNTNIRSIPWSLSKLRHLETLDLKQTLVTKVPKTVLKLKKLRHLLVYRTKEDRRIEEPTKAFICKGKKLGILDAMDPPRLLQRLYLKGPLQRFPRWVSSLHDLVRIRLKWSSLTEDNPIAALEDLPNLMELQLLDAYTGDQFDFNKGKFQKLKILDLERLERLKFIIMEDGTLPCLQKLIIRHCKELKQVPIGIDNLNHLNELFLCDMPEKFVAQLRKKVGELRHLLHRISYILWIQDVREEAYDIEDVIDLLSLDMTQESARRRWKMRHSINDLIEKINRSLENSQKIQERYQKLVSTPTNAVNNTYPHEKLASLFLGNVDTVGMEEPRNKLVSWVLEPKQRLKMMFVVGMAGLGKTTLVHSVYERVKQRFDSHVWITASESKTKLEILLSLLAKKFGCSITPGADMVAVTHELQKFLRNKRYVMVIDDFCVKDVWESIRLALPDGNNSRIIITTRRGDIANSCRDDDSIHIHKLQPLSWENAKRLFHTKAFSRNSRCPSGLEELSQSILQKCDGLPLGIIEIGRLLKSKAQTAYEWQKLHDNLESELRSGGGLSNMMKVLSTSYKDLPYHLKCCFLYMGIFPENKPVKRRRLVRLWIAERFVTEERGKTLEEVGEEYLNELIDRSLIQANEMDFDGRPKSVGVHCLMHKMILSLSHEENFCTLHCTGAKKNFTEKTRRLSIQKKDFDISQELPRLRTFFSFSTGRVNIRWINFLRLRVLDIQGTSLGAFPSVTTDLLLLRYLSLRNTDIRSIPETVSNLKQLETLDLKQTRVKKLPKSVLQLGELRHLLVCRYNNGRCIEEPTKAIICKGEMAVQNDRGAPTFDTVEEAGHCSTRKRRWKELVRLN* 1464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 850560 867482 + Vvi1g85 Vvi1g85 769285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g85 1463 Gene3D - 1094 1180 IPR042197 -
Vvi1g85 1463 Gene3D - 348 439 IPR042197 -
Vvi1g85 1463 Coils Coil 106 126 - -
Vvi1g85 1463 Pfam NB-ARC domain 209 437 IPR002182 GO:0043531
Vvi1g85 1463 Pfam NB-ARC domain 944 1182 IPR002182 GO:0043531
Vvi1g85 1463 Gene3D - 441 523 IPR036388 -
Vvi1g85 1463 Gene3D - 929 1089 IPR027417 -
Vvi1g85 1463 Gene3D - 183 343 IPR027417 -
Vvi1g85 1463 PANTHER DISEASE RESISTANCE PROTEIN RP 850 1416 IPR044974 GO:0006952
Vvi1g85 1463 PANTHER DISEASE RESISTANCE PROTEIN RP 689 830 IPR044974 GO:0006952
Vvi1g85 1463 PANTHER DISEASE RESISTANCE PROTEIN RP 70 667 IPR044974 GO:0006952
Vvi1g85 1463 SUPERFAMILY L domain-like 1249 1410 - -
Vvi1g85 1463 Coils Coil 887 907 - -
Vvi1g85 1463 CDD RX-CC_like 48 154 IPR038005 -
Vvi1g85 1463 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 449 IPR027417 -
Vvi1g85 1463 PRINTS Disease resistance protein signature 214 229 - -
Vvi1g85 1463 PRINTS Disease resistance protein signature 286 300 - -
Vvi1g85 1463 PRINTS Disease resistance protein signature 383 397 - -
Vvi1g85 1463 PRINTS Disease resistance protein signature 762 778 - -
Vvi1g85 1463 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 933 1194 IPR027417 -
Vvi1g85 1463 Gene3D Ribonuclease Inhibitor 1285 1431 IPR032675 -
Vvi1g85 1463 Gene3D Ribonuclease Inhibitor 579 837 IPR032675 -
Vvi1g85 1463 SUPERFAMILY L domain-like 561 829 - -
Vvi1g85 1463 Coils Coil 140 160 - -
Vvi1g85 1463 PANTHER - 70 667 - -
Vvi1g85 1463 PANTHER - 850 1416 - -
Vvi1g85 1463 PANTHER - 689 830 - -
Vvi1g85 1463 SMART LRR_typ_2 1376 1399 IPR003591 -
Vvi1g85 1463 SMART LRR_typ_2 630 653 IPR003591 -
Vvi1g85 1463 SMART LRR_typ_2 1353 1375 IPR003591 -
Vvi1g85 1463 SMART LRR_typ_2 607 629 IPR003591 -
Vvi1g85 1463 Gene3D - 50 165 - -
Vvi1g85 1463 Pfam Rx N-terminal domain 51 125 IPR041118 -
Vvi1g85 1463 Gene3D - 1181 1270 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g85 K13457 RPM1, RPS3; disease resistance protein RPM1 - vvi:100264573 1189.48
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g85 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .