Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g850 ATGGGATTGGGTGGTAATGATGTGAAAGTGGAGTCTTGGGAAGTTGGCAAATCCAAGGGAAGGAAGAAGAAAGATGGTGGGGAAGAGGAGACTGGGTGTTGTTGGGTTAAGCTCAGGTTTATGGCCAGCTGCATTTCTTCAAGATCTAAAGTTGATAGCTCCATTAGTGGAACCAGTACTCATTATGAAAATAGATCTACAAATGATACAAGCAGAGACCAACCGGTTGCTCCAGTAGTCTCATCTACAACCACTAGTAATGCAGAAAGCAATTCATCCACTTCCAAACTTGAAGAGGAACTTAAAGTTGCTTCTCGGCTTAGAAAATTCTCATTTAATGATCTTAAGATGGCAACACGGAATTTTAGACCCGAGTCTCTTCTTGGTGAAGGTGGTTTTGGCTGTGTATTTAAGGGGTGGATTGAAGAGAATGGAACTGCTCCAGTGAAGCCTGGCACAGGGCTTACTGTTGCTGTTAAAACGCTCAATCATGATGGGCTTCAGGGTCATAAAGAATGGCTGGCTGAAGTGAATTTCCTTGGTGACCTCATTCATCCTAATCTGGTCAAACTGATTGGTTATTGCATTGAAGATGATCAAAGGTTGCTAGTTTATGAGTTTATGCCTCGAGGGAGTTTGGAGAATCATCTGTTTAGGAGGGCCCTGCCTCTTCCATGGGCCATAAGGATGAAAATTGCACTAGGTGCTGCTAAGGGTCTTGCATTTCTTCATGAGGAAGCAGAAAGGCCAGTTATATATCGTGATTTTAAGACCTCCAACATCCTATTGGATGCAGAGTACAATGCCAAACTTTCTGATTTTGGACTTGCTAAAGATGGTCCCGAGGGAGATAAGACTCATGTATCTACCCGTGTTATGGGAACTTATGGATATGCTGCCCCTGAATATGTGATGACAGGACATTTGACATCAAGGAGTGATGTCTATAGTTTTGGTGTGGTTCTACTAGAAATGCTGACTGGCAGAAGATCCATGGACAAAAACCGGCCAAATGGGGAACATAACCTTGTGGAATGGGCAAGACCCCATCTAGGAGAAAGAAGAAGATTTTACCGTCTGATAGACCCACGGCTTGAGGGTCATTTTTCAATAAAAGGTGCCCAGAAAGCTGCCCAGCTGGCTGCTCACTGCCTCAGCCGGGACCCAAAAGTGAGGCCCTTAATGAGTGAAGTTGTTGAAGCCTTGAAGCCTCTGCCAAACCTTAAGGACATGGCGAGTTCATCTTATTATTTCCAAACCATGCAAGCTGAGCGCATTGGTTCCAGCCCAAATGCTCGAAATGGTGTCCGAACACAGCAAGGAATACTTTCAAGGAATGGCCATCAGCAGCAGAGGAGTCTTTCAATACCAAATGGTTCTCATGCTTCCCCGTATCACCAGAACCAATACCCCTATCAATCACCCAAACCCAATGGTAAACCGTAG 1446 44.67 MGLGGNDVKVESWEVGKSKGRKKKDGGEEETGCCWVKLRFMASCISSRSKVDSSISGTSTHYENRSTNDTSRDQPVAPVVSSTTTSNAESNSSTSKLEEELKVASRLRKFSFNDLKMATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLIHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRALPLPWAIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHLGERRRFYRLIDPRLEGHFSIKGAQKAAQLAAHCLSRDPKVRPLMSEVVEALKPLPNLKDMASSSYYFQTMQAERIGSSPNARNGVRTQQGILSRNGHQQQRSLSIPNGSHASPYHQNQYPYQSPKPNGKP* 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10769654 10781589 + Vvi1g850 Vvi1g850 770050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g850 481 Gene3D Phosphorylase Kinase; domain 1 81 207 - -
Vvi1g850 481 MobiDBLite consensus disorder prediction 51 98 - -
Vvi1g850 481 Pfam Protein tyrosine and serine/threonine kinase 126 402 IPR001245 GO:0004672|GO:0006468
Vvi1g850 481 MobiDBLite consensus disorder prediction 445 475 - -
Vvi1g850 481 PANTHER KINASE APK1B, CHLOROPLAST, PUTATIVE-RELATED 55 470 - -
Vvi1g850 481 ProSiteProfiles Protein kinase domain profile. 122 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g850 481 Gene3D Transferase(Phosphotransferase) domain 1 208 423 - -
Vvi1g850 481 MobiDBLite consensus disorder prediction 12 28 - -
Vvi1g850 481 MobiDBLite consensus disorder prediction 1 28 - -
Vvi1g850 481 MobiDBLite consensus disorder prediction 51 94 - -
Vvi1g850 481 CDD STKc_IRAK 128 405 - -
Vvi1g850 481 SUPERFAMILY Protein kinase-like (PK-like) 100 402 IPR011009 -
Vvi1g850 481 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Vvi1g850 481 ProSitePatterns Protein kinases ATP-binding region signature. 128 160 IPR017441 GO:0005524
Vvi1g850 481 MobiDBLite consensus disorder prediction 445 481 - -
Vvi1g850 481 PANTHER OS01G0588500 PROTEIN-RELATED 55 470 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76524 PF07714 PK_Tyr_Ser-Thr 3.20E-45 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g850 - - vvi:100263771 941.414