Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g855 ATGGCAGCAGTTAAATCCAGTTCCTTGCTTCTCCTTTTTTTCGTGTTATTCGCTGTTATAGCGCCAACAATACGAGCCCACATTGCAGAATATGATGATTATTGGAAGGAGCGAGAAGAGGAAGCCAAGAAAGCTGCCCTCGAAGCATTCCATCCGACACCGCAGGAAGTCAACGACCATTTCAATCTGCATGTTGAGGATGAGCTAACGGGGAGCAATGGAACAAGGAGGAGCCTGAGAGTTAACAAGGGACCATGCAAGGCTACAAATCCTATTGATCGATGCTGGAGGTGCCGTCCAAATTGGGCTTCACAACGCAAAAGGCTAGCTGACTGTGTCCTCGGTTTTGGGCGGAACACAGTGGGAGGAAAGTATGGCAAATACTACTTCGTGACCGATCCCTCCGATAATGACATGGTGAACCCTAAGAAGGGAACATTACGCCATGCCGTGATCCAGCCAAGGCCGCTGTGGATTGTGTTTGCTCGCAGTATGATAATTAGGTTGAATCAGGAGCTGATCATGACCAGTGACAAAACCATTGATGGAAGGGGAGTCAATGTCCATATCGCCTATGGTGCCGGCATTACAATTCAGTTCGTCAAGAATGTGATCATCCATGGCCTCCACATTCACGACATTGTTTCAGGCTCAGGAGGACTTATTAGGGATTCTGTCAATCACTTTGGCTATAGAAGCAGAAGTGATGGTGATGGAATCTCCATTTATGGTTCATCCCACGTTTGGATTGACCATAATTCCATGTCCAATTGTAAGGATGGACTGATCGATGCCATCCAAGGATCCACCGCCATCACCATCTCCAACAACCATTTCACCAAACACAATGAGGTGATGTTGTTCGGCGCAAGTGATAGTAACTCCGCGGATGAAATAATGCAAATCACGGTTGCATTCAACCACTTCGGAAGGGGATTGATTCAGAGGATGCCGAGGTGCCGATGGGGCTTCTTCCATGTTGTGAACAACGACTACACCCACTGGAACATGTATGCCATTGGCGGTAGTGCACATCCTACCATCATCAGCCAGGGCAACCGATACACAGCTCCTCATTTAGTGGATCCAAAACATGATGCTAAGCAGGTGACCAAGAGGGACTATGCGATGGAGTCGGAGTGGAAGAAGTGGACATGGAGATCGGAGGGAGATCTGATGAGGAATGGAGCCTTCTTCGTTCCATCTGGGAACCCCTCCAAAAGGATGCCATACTCTAGGCTGGATATGATCAAAGCAAAGCCAGGGACCTATGTTTCAAGACTCACCCGTTTCTCCGGTGCACTTACCTGCAGGCGTGGTGGACCTTGTTAA 1332 48.42 MAAVKSSSLLLLFFVLFAVIAPTIRAHIAEYDDYWKEREEEAKKAALEAFHPTPQEVNDHFNLHVEDELTGSNGTRRSLRVNKGPCKATNPIDRCWRCRPNWASQRKRLADCVLGFGRNTVGGKYGKYYFVTDPSDNDMVNPKKGTLRHAVIQPRPLWIVFARSMIIRLNQELIMTSDKTIDGRGVNVHIAYGAGITIQFVKNVIIHGLHIHDIVSGSGGLIRDSVNHFGYRSRSDGDGISIYGSSHVWIDHNSMSNCKDGLIDAIQGSTAITISNNHFTKHNEVMLFGASDSNSADEIMQITVAFNHFGRGLIQRMPRCRWGFFHVVNNDYTHWNMYAIGGSAHPTIISQGNRYTAPHLVDPKHDAKQVTKRDYAMESEWKKWTWRSEGDLMRNGAFFVPSGNPSKRMPYSRLDMIKAKPGTYVSRLTRFSGALTCRRGGPC* 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10843186 10845074 + Vvi1g855 Vvi1g855 770055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g855 443 Pfam Pectate lyase 174 354 IPR002022 -
Vvi1g855 443 PRINTS Pollen allergen Amb family signature 112 129 IPR018082 -
Vvi1g855 443 PRINTS Pollen allergen Amb family signature 136 161 IPR018082 -
Vvi1g855 443 PRINTS Pollen allergen Amb family signature 172 188 IPR018082 -
Vvi1g855 443 PRINTS Pollen allergen Amb family signature 236 257 IPR018082 -
Vvi1g855 443 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Vvi1g855 443 PRINTS Pollen allergen Amb family signature 338 357 IPR018082 -
Vvi1g855 443 PRINTS Pollen allergen Amb family signature 384 408 IPR018082 -
Vvi1g855 443 PRINTS Pollen allergen Amb family signature 414 437 IPR018082 -
Vvi1g855 443 Pfam Pectate lyase, N terminus 27 79 IPR007524 GO:0030570
Vvi1g855 443 SUPERFAMILY Pectin lyase-like 90 434 IPR011050 -
Vvi1g855 443 PANTHER PECTATE LYASE 7 443 - -
Vvi1g855 443 PANTHER PECTATE LYASE 18-RELATED 7 443 IPR045032 GO:0030570
Vvi1g855 443 SMART amb_all 164 361 IPR002022 -
Vvi1g855 443 Gene3D - 89 436 IPR012334 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g855 K01728 - vvi:100262177 901.738