Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi1g855 | ATGGCAGCAGTTAAATCCAGTTCCTTGCTTCTCCTTTTTTTCGTGTTATTCGCTGTTATAGCGCCAACAATACGAGCCCACATTGCAGAATATGATGATTATTGGAAGGAGCGAGAAGAGGAAGCCAAGAAAGCTGCCCTCGAAGCATTCCATCCGACACCGCAGGAAGTCAACGACCATTTCAATCTGCATGTTGAGGATGAGCTAACGGGGAGCAATGGAACAAGGAGGAGCCTGAGAGTTAACAAGGGACCATGCAAGGCTACAAATCCTATTGATCGATGCTGGAGGTGCCGTCCAAATTGGGCTTCACAACGCAAAAGGCTAGCTGACTGTGTCCTCGGTTTTGGGCGGAACACAGTGGGAGGAAAGTATGGCAAATACTACTTCGTGACCGATCCCTCCGATAATGACATGGTGAACCCTAAGAAGGGAACATTACGCCATGCCGTGATCCAGCCAAGGCCGCTGTGGATTGTGTTTGCTCGCAGTATGATAATTAGGTTGAATCAGGAGCTGATCATGACCAGTGACAAAACCATTGATGGAAGGGGAGTCAATGTCCATATCGCCTATGGTGCCGGCATTACAATTCAGTTCGTCAAGAATGTGATCATCCATGGCCTCCACATTCACGACATTGTTTCAGGCTCAGGAGGACTTATTAGGGATTCTGTCAATCACTTTGGCTATAGAAGCAGAAGTGATGGTGATGGAATCTCCATTTATGGTTCATCCCACGTTTGGATTGACCATAATTCCATGTCCAATTGTAAGGATGGACTGATCGATGCCATCCAAGGATCCACCGCCATCACCATCTCCAACAACCATTTCACCAAACACAATGAGGTGATGTTGTTCGGCGCAAGTGATAGTAACTCCGCGGATGAAATAATGCAAATCACGGTTGCATTCAACCACTTCGGAAGGGGATTGATTCAGAGGATGCCGAGGTGCCGATGGGGCTTCTTCCATGTTGTGAACAACGACTACACCCACTGGAACATGTATGCCATTGGCGGTAGTGCACATCCTACCATCATCAGCCAGGGCAACCGATACACAGCTCCTCATTTAGTGGATCCAAAACATGATGCTAAGCAGGTGACCAAGAGGGACTATGCGATGGAGTCGGAGTGGAAGAAGTGGACATGGAGATCGGAGGGAGATCTGATGAGGAATGGAGCCTTCTTCGTTCCATCTGGGAACCCCTCCAAAAGGATGCCATACTCTAGGCTGGATATGATCAAAGCAAAGCCAGGGACCTATGTTTCAAGACTCACCCGTTTCTCCGGTGCACTTACCTGCAGGCGTGGTGGACCTTGTTAA | 1332 | 48.42 | MAAVKSSSLLLLFFVLFAVIAPTIRAHIAEYDDYWKEREEEAKKAALEAFHPTPQEVNDHFNLHVEDELTGSNGTRRSLRVNKGPCKATNPIDRCWRCRPNWASQRKRLADCVLGFGRNTVGGKYGKYYFVTDPSDNDMVNPKKGTLRHAVIQPRPLWIVFARSMIIRLNQELIMTSDKTIDGRGVNVHIAYGAGITIQFVKNVIIHGLHIHDIVSGSGGLIRDSVNHFGYRSRSDGDGISIYGSSHVWIDHNSMSNCKDGLIDAIQGSTAITISNNHFTKHNEVMLFGASDSNSADEIMQITVAFNHFGRGLIQRMPRCRWGFFHVVNNDYTHWNMYAIGGSAHPTIISQGNRYTAPHLVDPKHDAKQVTKRDYAMESEWKKWTWRSEGDLMRNGAFFVPSGNPSKRMPYSRLDMIKAKPGTYVSRLTRFSGALTCRRGGPC* | 444 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 10843186 | 10845074 | + | Vvi1g855 | Vvi1g855 | 770055 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi1g855 | 443 | Pfam | Pectate lyase | 174 | 354 | IPR002022 | - | |
Vvi1g855 | 443 | PRINTS | Pollen allergen Amb family signature | 112 | 129 | IPR018082 | - | |
Vvi1g855 | 443 | PRINTS | Pollen allergen Amb family signature | 136 | 161 | IPR018082 | - | |
Vvi1g855 | 443 | PRINTS | Pollen allergen Amb family signature | 172 | 188 | IPR018082 | - | |
Vvi1g855 | 443 | PRINTS | Pollen allergen Amb family signature | 236 | 257 | IPR018082 | - | |
Vvi1g855 | 443 | PRINTS | Pollen allergen Amb family signature | 316 | 335 | IPR018082 | - | |
Vvi1g855 | 443 | PRINTS | Pollen allergen Amb family signature | 338 | 357 | IPR018082 | - | |
Vvi1g855 | 443 | PRINTS | Pollen allergen Amb family signature | 384 | 408 | IPR018082 | - | |
Vvi1g855 | 443 | PRINTS | Pollen allergen Amb family signature | 414 | 437 | IPR018082 | - | |
Vvi1g855 | 443 | Pfam | Pectate lyase, N terminus | 27 | 79 | IPR007524 | GO:0030570 | |
Vvi1g855 | 443 | SUPERFAMILY | Pectin lyase-like | 90 | 434 | IPR011050 | - | |
Vvi1g855 | 443 | PANTHER | PECTATE LYASE | 7 | 443 | - | - | |
Vvi1g855 | 443 | PANTHER | PECTATE LYASE 18-RELATED | 7 | 443 | IPR045032 | GO:0030570 | |
Vvi1g855 | 443 | SMART | amb_all | 164 | 361 | IPR002022 | - | |
Vvi1g855 | 443 | Gene3D | - | 89 | 436 | IPR012334 | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi1g855 | K01728 | - | vvi:100262177 | 901.738 |