Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g856 ATGGCAGCACCTAAATCCAATTCATTGCTTCTCCTGTTTGTGGTGATGTTCATGGTGGTAGTCCCAACAATACGAGCCCACATTGCGGAATACGATGACTACTGGAAAGCGCGGGAAAAGGAAGCCAAGACAGTTGCAATCGACGCATTTGATCCCAGCCCAGAGGATGTCAATGACGATTTCAACAAGAATGTTGAGAAATCGATATTCGGAAAGAATGGCACGAGAAGGAACCTGAAAGTAAACAAGGGCCCATGCAAGGCCACAAACCCCATTGATCGATGCTGGAGATGCCGTCGCAACTGGGCGATGGATCGCAGGAGGCTAGCCGACTGCGTCCTTGGTTTTGGGCGGAGAACAGTGGGAGGAAAGCACGGGAGGTTATACATTGTGACTGATCCGTCCGACAATGACATGCTTAATCCTAAGCCTGGAACCTTACGCTACGCCGTCATCCAGCCACAGCCACTGTGGATCGTGTTTGGGCGCAGTATGATAATTAAGCTGAAACAGGAGCTGATGGTGACCAGTGACAAAACCATTGACGGAAGGGGAGTCAATGTCCACATCGCATATGGTGCCGGCATTACGATTCAGTTCGCCAGGAATGTGATCATCCATGGCCTCCACATTCACGACATTGTTTCACGCCCAGGAGGACTTATTAGGGATTCTGTCCATCACTTCGGCTTGAGAACCAGGAGCGATGGCGATGGAATCTCCATCTTTGGCTCATCCCACGTTTGGATTGACCATAACTCCATGTCCAAGTGCGAGGACGGCCTGGTCGATGCCATCCAAGGATCCACCGCTATCACCATCTCCAACAACCATTTTACCAAGCACAATGAGACGATGTTGTTAGGCGCAAGTGATGGGTACTCGGGCGATATCATAATGCAAGTGACCGTGGCATTCAACCATTTCGGGAGGGGATTGATTCAAAGGATGCCAAGGTGCCGATGGGGGTTTTTCCATGTTGTGAACAACGACTACACCCACTGGAACATGTACGCTGTGGGTGGTAGTGCACATCCTACCATAGTCAGCCAGGGCAACCGATACGTCGCTGCCCCCTTAATGGATCCAAAGCATGACGCTAAGGAGGTGACCAAGAGAGACCATGCGACGAAAGCAGAGTGGAGCAAGTGGACATGGAGATCAGAGGGAGATCTGATGGTAAATGGAGCCTTCTTTGTTCAATCGGGGGTGCCTTTTAAGAAAAAGCCTTTCTCCAGATATGATATGATCAAAGCAAAGCCAGGCAAATTTGTGCCCAGACTCACTCGCTACTCAGGCGCCCTTACTTGCTGGCGTACCTCACCCTGTTAA 1332 50.45 MAAPKSNSLLLLFVVMFMVVVPTIRAHIAEYDDYWKAREKEAKTVAIDAFDPSPEDVNDDFNKNVEKSIFGKNGTRRNLKVNKGPCKATNPIDRCWRCRRNWAMDRRRLADCVLGFGRRTVGGKHGRLYIVTDPSDNDMLNPKPGTLRYAVIQPQPLWIVFGRSMIIKLKQELMVTSDKTIDGRGVNVHIAYGAGITIQFARNVIIHGLHIHDIVSRPGGLIRDSVHHFGLRTRSDGDGISIFGSSHVWIDHNSMSKCEDGLVDAIQGSTAITISNNHFTKHNETMLLGASDGYSGDIIMQVTVAFNHFGRGLIQRMPRCRWGFFHVVNNDYTHWNMYAVGGSAHPTIVSQGNRYVAAPLMDPKHDAKEVTKRDHATKAEWSKWTWRSEGDLMVNGAFFVQSGVPFKKKPFSRYDMIKAKPGKFVPRLTRYSGALTCWRTSPC* 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10846296 10848235 + Vvi1g856 Vvi1g856 770056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g856 443 Pfam Pectate lyase 170 354 IPR002022 -
Vvi1g856 443 SUPERFAMILY Pectin lyase-like 90 434 IPR011050 -
Vvi1g856 443 PRINTS Pollen allergen Amb family signature 112 129 IPR018082 -
Vvi1g856 443 PRINTS Pollen allergen Amb family signature 136 161 IPR018082 -
Vvi1g856 443 PRINTS Pollen allergen Amb family signature 172 188 IPR018082 -
Vvi1g856 443 PRINTS Pollen allergen Amb family signature 236 257 IPR018082 -
Vvi1g856 443 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Vvi1g856 443 PRINTS Pollen allergen Amb family signature 338 357 IPR018082 -
Vvi1g856 443 PRINTS Pollen allergen Amb family signature 384 408 IPR018082 -
Vvi1g856 443 PRINTS Pollen allergen Amb family signature 414 437 IPR018082 -
Vvi1g856 443 PANTHER PECTATE LYASE 18-RELATED 7 443 IPR045032 GO:0030570
Vvi1g856 443 Gene3D - 89 436 IPR012334 -
Vvi1g856 443 SMART amb_all 164 361 IPR002022 -
Vvi1g856 443 Pfam Pectate lyase, N terminus 27 79 IPR007524 GO:0030570
Vvi1g856 443 PANTHER PECTATE LYASE 7 443 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g856 Vvi17g511 ECH
Vvi1g856 Vvi14g1485 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g856 K01728 - vvi:100257069 913.679