Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g857 ATGGAGATGACTACAGTGAAATCTGAATTAGGCCTGGAAAGGGGCCGCTTGTGCACTGCAGAAACTGATGCTTTGGAGGTGACCAAGTGTGTTAAGAGAAGGAGAAGAGATCCATCAGCAGTTACACCCGGATGCAGTAAACAAGGAGAGCAGCAGAAGCAGGTGTTGCTGCAGGCTGGGCAATCCATTACTGCCATTGCCACTACTATGAAGAGAAGTTCAAGATTCAGGGGTGTTAGCAGACATAGATGGACAGGGAGGTTTGAGGCTCATTTATGGGATAAAGGGTCCTGGAATGTGACACAGAGAAAAAAGGGAAAGCAAGTCTATCTTGGAGCTTATGATGAAGAAGAATCTGCTGCAAGAGCGTATGACTTGGCCGCACTGAAGTATTGGGGGCCATCAACTTTTACCAATTTCCCAGTATCAGATTATGAGAAGGAGATTGAAATAATGCAGGGTCTAACAAAGGAGGAATACTTGGCTTCTTTAAGAAGGAGAAGCAGTGGTTTTTCAAGAGGAGTGTCCAAGTACAGAGGAGTTGCAAGGCATCATCACAACGGAAGATGGGAAGCAAGGATTGGGAGGGTGTTTGGAAACAAGTATCTCTACCTTGGAACTTACAGTACCCAAGAAGAGGCTGCTCATGCTTATGACATTGCAGCAATTGAGTACAGAGGGATCAATGCTGTAACAAACTTCGAGTTGAGCACATACGTAAGGTGGCTGAGGCCCAGAGCCACTGCTCTTACCCCTCAGGAACCAAGATCAAATTCAATAATGCAAGCATCCTCTAACTGCCTTCCAAATGAGGAAGTAGAGCTGTCCTTCCTCAGCCCCAATCCTTTTACAGTAGATGACTTGGCAACTCCTCTAAAGCAAGAAAAGTTCCAAAGAGAGGTTTCCATCAGCCCTTGCACCAAGTCATCTTCGCCAACTGCACTAAGTCTCCTCCATAGATCTTCAGTATTTAGACAACTGGTGGAGAAGAATTCGAACAGCATCGAATAA 1011 45.6 MEMTTVKSELGLERGRLCTAETDALEVTKCVKRRRRDPSAVTPGCSKQGEQQKQVLLQAGQSITAIATTMKRSSRFRGVSRHRWTGRFEAHLWDKGSWNVTQRKKGKQVYLGAYDEEESAARAYDLAALKYWGPSTFTNFPVSDYEKEIEIMQGLTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAAHAYDIAAIEYRGINAVTNFELSTYVRWLRPRATALTPQEPRSNSIMQASSNCLPNEEVELSFLSPNPFTVDDLATPLKQEKFQREVSISPCTKSSSPTALSLLHRSSVFRQLVEKNSNSIE* 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10860181 10861942 - Vvi1g857 Vvi1g857 770057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g857 336 ProSiteProfiles AP2/ERF domain profile. 75 141 IPR001471 GO:0003700|GO:0006355
Vvi1g857 336 SUPERFAMILY DNA-binding domain 176 237 IPR016177 GO:0003677
Vvi1g857 336 ProSiteProfiles AP2/ERF domain profile. 177 235 IPR001471 GO:0003700|GO:0006355
Vvi1g857 336 Pfam AP2 domain 176 227 IPR001471 GO:0003700|GO:0006355
Vvi1g857 336 Pfam AP2 domain 74 133 IPR001471 GO:0003700|GO:0006355
Vvi1g857 336 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 334 - -
Vvi1g857 336 Gene3D AP2/ERF domain 74 143 IPR036955 GO:0003700|GO:0006355
Vvi1g857 336 Gene3D AP2/ERF domain 176 237 IPR036955 GO:0003700|GO:0006355
Vvi1g857 336 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 334 - -
Vvi1g857 336 CDD AP2 74 143 IPR001471 GO:0003700|GO:0006355
Vvi1g857 336 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Vvi1g857 336 PRINTS Ethylene responsive element binding protein signature 217 237 IPR001471 GO:0003700|GO:0006355
Vvi1g857 336 SMART rav1_2 75 147 IPR001471 GO:0003700|GO:0006355
Vvi1g857 336 SMART rav1_2 177 241 IPR001471 GO:0003700|GO:0006355
Vvi1g857 336 CDD AP2 176 237 IPR001471 GO:0003700|GO:0006355
Vvi1g857 336 SUPERFAMILY DNA-binding domain 74 143 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g857 Vvi14g1487 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14538 PF00847 AP2 9.50E-14 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g857 - - vvi:100251939 666.381