Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g859 ATGCTGCCTCAATGGAGTCACAAAAACGTCCGCTTCTTGATTTTTCTCCACTCAAAGCGAAAGATAGACTTCACTCCCCGCATCATTTCTTCTTCCATCAACGATGATTCAGTTCCCAAACAACCCCAGTTGGGTTATGATCCTTCGGTGGAGCTCTTCGGACTGGAGGTTGATCTACAACCCAGGAATGTTACATCTGATGCTCCCAAAATAAGGTCGTGGTTTGGTCCCAATGGCCAGTATATCAGAGAGCTACCTTGCCCAAGTTGCAGGGGAAGGGGATATACACCATGCACTGAGTGTGGAATAGAAAGATCTAGATTAGATTGTTCACAATGTAATGGAAAGGGTATGCAGACTTGTCGTAAGTGCTTTGGGGATTGTGTCATATGGGAAGAGTCTATTGATGAACGACCATGGGAGAAAGCCCGCTCTGTCTCCCCACTCAAAGTGAAGGAAGATGATGAGGTAGACAACTTAGACATAAAGCTGGATGTGAGGAGAAAGTCAAAGCGTGTATACCAATCTCCATCTCCTGAAGTTGGGTTAAAGATCAGTCGATCACTAAAAAGTCTCAATGCCAAAACTGGTCTTTTTAGTAAGAGAATGAAGATCATTCATCGTGATCCAAAGCTTCATGCGCAAAGAGTGGCTGCAATTAAGAAAGCCAAAGGTACTGCTGCAGCAAGAAAGCGTGCTTCTGAAGCTTTGAAAGCTTTCTTCCGTGACCCAGAGAACCGTCGTAAGAGAAGCATTGCCATGAAAGGTGCCAAATTTTACTGTAAAAACTGCGGACGTGAAGGTCATAGGAGACACTACTGTCCTGAACTCGCCAATAGTTCAGTGGATAGGCGGTTCAGATGTCGGTTATGTGGGGAAAAGGGCCATAATAGAAGAACCTGTCGGAGGTCAAGAGAAAGTGGTACCAGAAGCACGGTTTCAAGGCATCACCATTGTAGGATATGTGGTCATAGCGGCCATAACCGCAGGACATGCCCTCAAGGTACTGGGTTAAAATTAGATGCCGGTGGTACAAACAGAGGTTCTCTAATTTCTGGAAGTAGGATATATGCCTGCAGGTTGTGCCTAGAAAAAGGACACAATATCAGGACATGTCCTAGCAAAAATAAATAG 1134 44.97 MLPQWSHKNVRFLIFLHSKRKIDFTPRIISSSINDDSVPKQPQLGYDPSVELFGLEVDLQPRNVTSDAPKIRSWFGPNGQYIRELPCPSCRGRGYTPCTECGIERSRLDCSQCNGKGMQTCRKCFGDCVIWEESIDERPWEKARSVSPLKVKEDDEVDNLDIKLDVRRKSKRVYQSPSPEVGLKISRSLKSLNAKTGLFSKRMKIIHRDPKLHAQRVAAIKKAKGTAAARKRASEALKAFFRDPENRRKRSIAMKGAKFYCKNCGREGHRRHYCPELANSSVDRRFRCRLCGEKGHNRRTCRRSRESGTRSTVSRHHHCRICGHSGHNRRTCPQGTGLKLDAGGTNRGSLISGSRIYACRLCLEKGHNIRTCPSKNK* 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10908567 10915503 - Vvi1g859 Vvi1g859 770059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g859 377 SUPERFAMILY Retrovirus zinc finger-like domains 256 304 IPR036875 GO:0003676|GO:0008270
Vvi1g859 377 Gene3D - 315 377 - -
Vvi1g859 377 Gene3D - 258 314 - -
Vvi1g859 377 ProSiteProfiles Zinc finger CCHC-type profile. 319 334 IPR001878 GO:0003676|GO:0008270
Vvi1g859 377 ProSiteProfiles Zinc finger CCHC-type profile. 261 276 IPR001878 GO:0003676|GO:0008270
Vvi1g859 377 ProSiteProfiles Zinc finger CCHC-type profile. 287 303 IPR001878 GO:0003676|GO:0008270
Vvi1g859 377 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 2 376 - -
Vvi1g859 377 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 2 376 - -
Vvi1g859 377 SMART c2hcfinal6 260 276 IPR001878 GO:0003676|GO:0008270
Vvi1g859 377 SMART c2hcfinal6 318 334 IPR001878 GO:0003676|GO:0008270
Vvi1g859 377 SMART c2hcfinal6 287 303 IPR001878 GO:0003676|GO:0008270
Vvi1g859 377 SMART c2hcfinal6 358 374 IPR001878 GO:0003676|GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g859 - - vvi:100258796 781.171