Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g86 ATGCCTGAGAAATTCGTGACCCAGCTGAAGAAAAAAGGCGGTGAACTTCGCCATCTCCTTCACCAAAAGGAGAAGAATGTGGCAGAGAAGGCAATCCAGATGGCACCTATTTTAGATAGCCCAAAGAATGTGGTAGGCAGGGCAACAATATTTTTGCAGTCAATGAATGTGTCACCACATGTATTGAACTTTTGCTCAAATTCATCAAATGGAACTTCAAAAACCAACAACTTGTTTATGCGAAACCAAAAGATTGAATATTTCCTGGGTGGATTTTTGGGAACTGATCACACACACACAAGAAATCTCCATCAAGCTAGCTGTATTCTCAGTGAATATTTCCTAGGTGGATTTAAGAGTGCTTGTGGTCATTCAATAAGGTTAATAAATTGTCTGGAGGAAGCACCCCCAGGTGATTATCATTTATCTACACACAGAAATTCTAAGACATTTCTGTGGATGGCAGATGGGGCTGTGTCGTTTCTTCTTCAAAATCTTGAAGCTTTTGCAACTAGAGAATGGAACTTGCAGGAACATATCAGGAATGGAGTCCATAACTTAAAAAGGGAACTGCGGAGCATAGAGGCCCTGATGAGGGATGCTGATGCAAAGAAAGAGCATGATCACCAATTCAAAGTGTGGATTCAAGAAGTTCGCACAGAAGCTTATGCCATTGAGGATGTTCTTGACCTATTCAGACTCCACCGGGATCAAGAATCAGTTATGTTCGTGGTGGGGATGGCTGGACTGGGGAAGACAACGCTCGCCCGCAGCGTGTACGAGATGGTGAAGGAGCACTTTGATTGCCATGCCTGGATCATTGCTTCAAAGTCCAAAACCAAACCTGAAACTTTACGGAGCTTGTTGGAGCACCTTGGCTGTTCGACAGAGGGAGATGATGATTCTATTGATATCCACAAGGCTTGGAGGAAGTCTCCAAATCCATCTTACAGAAATGTGATGGATTACCACTTGGGATTATTGAAATCGGTAAGCTGTTGTGGGGTAAGCGTCAAAAGCTACCCAAAGCAGTCCTACAACTTGATAAACTTCGCCACTTGCTGGTTTATGCCTACAATATGGGAAATCGGAGCAATGAAGAATCTGCAAAAGCTATCATTTGTAAAGGCGAAAAGGCATAACAGAATGATACAGGAGCTCAAAAATCTGACAAAGCTGAGGAAGCTGGGCATTGTAGAACTAGCAAAAGAAGATGGCAATAGCTTGTGCCACTCAATTGAGAAGATGCCGGATCTCCTTTCCTTGGATGTTACCTCCCTTAGTAAGGGGGAGCCTTTGGAGCTTGATGCAATGACCAATCCCCCGCGTCTTCTTCAACGCCTGTATCTCAAAGGGCACTTGCAAAGGTTTCCAAAGTGGGTATCTTCTCTACATGACCTGGTGAGAATACGCCTAAAATGGTCCTTATTGTCACAAGACAACCCAATTGAAGCTCTTCAAGATCTTCCAAACTTGATGGAGCTGCAGTTACTTGATGCATACACTGGAACCCAGTTGGACTTCAACTCGGGAAAATTTCAGAAGCTTAAGATATTAGACCTTGAGCAATTGAAACAGCTGAGGTTTATCATAATGGAAGATGACACATTGCCTTGCCTACAAAAGCTGATCATAAGGCAATGCAATGAGCTGGAACATGTCCCCGTAGGCATTGACGGGCTTCATCATCTCAATGAGCTGCACCTCTGCGATATGCCTGAGAAATTCGTGGCACTGCTGAAGAAAAGAGGCGGTGAACTTCGCCATTTGCTTCACCGTATTTTGCGTATTCTCTCATATCAACAGGGCCAGTTGGAGGGTGGTCTATGTATTGACTCGGATGCTCTTGACCTGTTCAAACTCAAACAAGAATCAGTGTGGCGCCGCCTGAAACTGCGTCACTCCATCAACGACTTGATACAGGATATTGAGCGGAGTCTCCAAAACATTCAGCGGACAAAGGAGAGGTATCGCAGCATGGCCTCCTATTCAACCAATGCTGGCAACAACACATACCTTCATGTGAGAGTGGCTCCTTTGTTCATAGGTAACGTTGATACCGTGGGCATTGAGGAGCCTACAAATAAGCTGGTTTCCTGGGCCTTGGAACCGAAACAGAGGCTTGAGGTGATGTTTGTGGTGGGGATGGCTGGACTGGGGAAGACCACTCTTGTCCACAGCGTGTATGAGAGCGTGAAACAGAACTTTGATTGCCATATCTGGATCACTGCTTCAAAGTCCAAAACCAAACTCGATATCTTACGGACCTTGTTGGTGGAGAAATTCGGCTGTACAATCACACAGGGGGGCGATGTGGTTGCTCTGACGCATAAGCTGAGAAAATTTCTCCACAACAAACGGTATGTCATAGTTCTTGATGACTTATGGGTAAAAGATGTTTGGGAGTCCATTAGACTTGCCTTGCCAAATGGTAAGGACAGTAGAATAATTATCACTACAAGGAGAGGCGATATAGCTAATTCTTGGAGAGATGATGATTCTGTTGATATCCACATGCTTCAGCCACTGTCACCGGAAAGGGCTGAGAAACTCTTCTATAAGAAAGCTTTCTCAAGAAATGGCAGATGTCCTTCAGGCTTGGAGGAAGTCTCGAAATCCATCTTACAGAAATGTGATGGATTACCACTTGGGATTATTGAAATCGGTAGACTTTTATCCATCAAGGCTCCAACTAAAAATGAGTGGAAAATATTACATGATAGCCTTGAGTCTGAATTGAGAGGCAGTGGTGGCCTTTCAAATATTACGAAAGTGCTGTCTGCAAGTTATAATGATTTACCTTTCCATCTCAAGTATTGTTTCTTGTACATGAGCATCTTTCCTGAGACTAGCCCAGTTAAGCGAAGAAGGCTAATTCGGCTATGGATAGCTGAAGGGTTTGTAATAGAGAAAGGAGGCAAGACATCTGAAGAGGTTGGGGAAGAGTATCTGAATGAGCTGATTGACAGGAGTCTGATAAAGGTAAATGAAATGGATTTTGAAGGAAGGCCAAAAAGTGTGGGAGTTCATAGTCTGATGCTGAAGATGATTCTCTCAGTCTCACGAGAGGAGAACTTTTGTTCTGTTTGTACAGGATCAGAAAGGAACTTGAGTGAGAAAACCCGGCGCCTATCTATTCAGAAGGAAGATTTTGATGTGTCTCAGGACTTACCCTGTGTTCGAACCTTCTTCAGTTTCGGTATAGGCAAAGTAAAGATTGGTTCCAACTTCAAACTATTGAAGGTCTTGGACATACAGGGCACTCCTTTGGAAGAATTTCCGGGTGTAATTAAAGATCTTCTGCTCTTGAGGTACTTGAGTTTGAGGAATACAAATATAAGGAGCATTCCAGGGACCCTGGGTGACCTTCATCACCTTGAGACCTTGGATCTTAAGCAGACTCTGGTAACAAAAGTACCCAAAGCAGTCCTACAACTTGAGAAACTTCGCCATTTGCTGGTTTATCGCACCAAAGAGGATCGGCGCATTGAAGAACCTACAAAAGCTGTCATTTGTAAAGGTGAGTGGGCAGCACAGAATGAGTCGGGAGCACAGAATGATACAAGGGCTCGACAATCTTACGCAGTTGAGGAAGCTGGGCATTGTAGAACTAGCAAAAGAACGTGGGGCGAGCTTGTGCCTCTCAATTGA 3651 44.07 MPEKFVTQLKKKGGELRHLLHQKEKNVAEKAIQMAPILDSPKNVVGRATIFLQSMNVSPHVLNFCSNSSNGTSKTNNLFMRNQKIEYFLGGFLGTDHTHTRNLHQASCILSEYFLGGFKSACGHSIRLINCLEEAPPGDYHLSTHRNSKTFLWMADGAVSFLLQNLEAFATREWNLQEHIRNGVHNLKRELRSIEALMRDADAKKEHDHQFKVWIQEVRTEAYAIEDVLDLFRLHRDQESVMFVVGMAGLGKTTLARSVYEMVKEHFDCHAWIIASKSKTKPETLRSLLEHLGCSTEGDDDSIDIHKAWRKSPNPSYRNVMDYHLGLLKSVSCCGVSVKSYPKQSYNLINFATCWFMPTIWEIGAMKNLQKLSFVKAKRHNRMIQELKNLTKLRKLGIVELAKEDGNSLCHSIEKMPDLLSLDVTSLSKGEPLELDAMTNPPRLLQRLYLKGHLQRFPKWVSSLHDLVRIRLKWSLLSQDNPIEALQDLPNLMELQLLDAYTGTQLDFNSGKFQKLKILDLEQLKQLRFIIMEDDTLPCLQKLIIRQCNELEHVPVGIDGLHHLNELHLCDMPEKFVALLKKRGGELRHLLHRILRILSYQQGQLEGGLCIDSDALDLFKLKQESVWRRLKLRHSINDLIQDIERSLQNIQRTKERYRSMASYSTNAGNNTYLHVRVAPLFIGNVDTVGIEEPTNKLVSWALEPKQRLEVMFVVGMAGLGKTTLVHSVYESVKQNFDCHIWITASKSKTKLDILRTLLVEKFGCTITQGGDVVALTHKLRKFLHNKRYVIVLDDLWVKDVWESIRLALPNGKDSRIIITTRRGDIANSWRDDDSVDIHMLQPLSPERAEKLFYKKAFSRNGRCPSGLEEVSKSILQKCDGLPLGIIEIGRLLSIKAPTKNEWKILHDSLESELRGSGGLSNITKVLSASYNDLPFHLKYCFLYMSIFPETSPVKRRRLIRLWIAEGFVIEKGGKTSEEVGEEYLNELIDRSLIKVNEMDFEGRPKSVGVHSLMLKMILSVSREENFCSVCTGSERNLSEKTRRLSIQKEDFDVSQDLPCVRTFFSFGIGKVKIGSNFKLLKVLDIQGTPLEEFPGVIKDLLLLRYLSLRNTNIRSIPGTLGDLHHLETLDLKQTLVTKVPKAVLQLEKLRHLLVYRTKEDRRIEEPTKAVICKGEWAAQNESGAQNDTRARQSYAVEEAGHCRTSKRTWGELVPLN* 1217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 867582 888643 + Vvi1g86 Vvi1g86 769286

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g86 1216 Pfam Rx N-terminal domain 158 240 IPR041118 -
Vvi1g86 1216 Gene3D - 843 929 IPR042197 -
Vvi1g86 1216 CDD RX-CC_like 155 235 IPR038005 -
Vvi1g86 1216 SUPERFAMILY L domain-like 1000 1156 - -
Vvi1g86 1216 PANTHER - 177 291 - -
Vvi1g86 1216 PANTHER - 614 1159 - -
Vvi1g86 1216 PANTHER - 360 578 - -
Vvi1g86 1216 SUPERFAMILY L domain-like 351 576 - -
Vvi1g86 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 679 943 IPR027417 -
Vvi1g86 1216 Gene3D - 157 265 - -
Vvi1g86 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 300 IPR027417 -
Vvi1g86 1216 Coils Coil 184 204 - -
Vvi1g86 1216 Coils Coil 636 660 - -
Vvi1g86 1216 Pfam NB-ARC domain 693 931 IPR002182 GO:0043531
Vvi1g86 1216 Pfam NB-ARC domain 236 301 IPR002182 GO:0043531
Vvi1g86 1216 Gene3D - 930 1019 IPR036388 -
Vvi1g86 1216 Gene3D Ribonuclease Inhibitor 1071 1174 IPR032675 -
Vvi1g86 1216 Gene3D Ribonuclease Inhibitor 331 583 IPR032675 -
Vvi1g86 1216 PRINTS Disease resistance protein signature 710 725 - -
Vvi1g86 1216 PRINTS Disease resistance protein signature 782 796 - -
Vvi1g86 1216 PRINTS Disease resistance protein signature 878 892 - -
Vvi1g86 1216 PRINTS Disease resistance protein signature 1121 1137 - -
Vvi1g86 1216 PANTHER DISEASE RESISTANCE PROTEIN RP 177 291 IPR044974 GO:0006952
Vvi1g86 1216 PANTHER DISEASE RESISTANCE PROTEIN RP 360 578 IPR044974 GO:0006952
Vvi1g86 1216 PANTHER DISEASE RESISTANCE PROTEIN RP 614 1159 IPR044974 GO:0006952
Vvi1g86 1216 Gene3D - 680 837 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g86 K13457 RPM1, RPS3; disease resistance protein RPM1 - vvi:100261136 1040.02
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g86 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021167 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3