Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g86 ATGCCTGAGAAATTCGTGACCCAGCTGAAGAAAAAAGGCGGTGAACTTCGCCATCTCCTTCACCAAAAGGAGAAGAATGTGGCAGAGAAGGCAATCCAGATGGCACCTATTTTAGATAGCCCAAAGAATGTGGTAGGCAGGGCAACAATATTTTTGCAGTCAATGAATGTGTCACCACATGTATTGAACTTTTGCTCAAATTCATCAAATGGAACTTCAAAAACCAACAACTTGTTTATGCGAAACCAAAAGATTGAATATTTCCTGGGTGGATTTTTGGGAACTGATCACACACACACAAGAAATCTCCATCAAGCTAGCTGTATTCTCAGTGAATATTTCCTAGGTGGATTTAAGAGTGCTTGTGGTCATTCAATAAGGTTAATAAATTGTCTGGAGGAAGCACCCCCAGGTGATTATCATTTATCTACACACAGAAATTCTAAGACATTTCTGTGGATGGCAGATGGGGCTGTGTCGTTTCTTCTTCAAAATCTTGAAGCTTTTGCAACTAGAGAATGGAACTTGCAGGAACATATCAGGAATGGAGTCCATAACTTAAAAAGGGAACTGCGGAGCATAGAGGCCCTGATGAGGGATGCTGATGCAAAGAAAGAGCATGATCACCAATTCAAAGTGTGGATTCAAGAAGTTCGCACAGAAGCTTATGCCATTGAGGATGTTCTTGACCTATTCAGACTCCACCGGGATCAAGAATCAGTTATGTTCGTGGTGGGGATGGCTGGACTGGGGAAGACAACGCTCGCCCGCAGCGTGTACGAGATGGTGAAGGAGCACTTTGATTGCCATGCCTGGATCATTGCTTCAAAGTCCAAAACCAAACCTGAAACTTTACGGAGCTTGTTGGAGCACCTTGGCTGTTCGACAGAGGGAGATGATGATTCTATTGATATCCACAAGGCTTGGAGGAAGTCTCCAAATCCATCTTACAGAAATGTGATGGATTACCACTTGGGATTATTGAAATCGGTAAGCTGTTGTGGGGTAAGCGTCAAAAGCTACCCAAAGCAGTCCTACAACTTGATAAACTTCGCCACTTGCTGGTTTATGCCTACAATATGGGAAATCGGAGCAATGAAGAATCTGCAAAAGCTATCATTTGTAAAGGCGAAAAGGCATAACAGAATGATACAGGAGCTCAAAAATCTGACAAAGCTGAGGAAGCTGGGCATTGTAGAACTAGCAAAAGAAGATGGCAATAGCTTGTGCCACTCAATTGAGAAGATGCCGGATCTCCTTTCCTTGGATGTTACCTCCCTTAGTAAGGGGGAGCCTTTGGAGCTTGATGCAATGACCAATCCCCCGCGTCTTCTTCAACGCCTGTATCTCAAAGGGCACTTGCAAAGGTTTCCAAAGTGGGTATCTTCTCTACATGACCTGGTGAGAATACGCCTAAAATGGTCCTTATTGTCACAAGACAACCCAATTGAAGCTCTTCAAGATCTTCCAAACTTGATGGAGCTGCAGTTACTTGATGCATACACTGGAACCCAGTTGGACTTCAACTCGGGAAAATTTCAGAAGCTTAAGATATTAGACCTTGAGCAATTGAAACAGCTGAGGTTTATCATAATGGAAGATGACACATTGCCTTGCCTACAAAAGCTGATCATAAGGCAATGCAATGAGCTGGAACATGTCCCCGTAGGCATTGACGGGCTTCATCATCTCAATGAGCTGCACCTCTGCGATATGCCTGAGAAATTCGTGGCACTGCTGAAGAAAAGAGGCGGTGAACTTCGCCATTTGCTTCACCGTATTTTGCGTATTCTCTCATATCAACAGGGCCAGTTGGAGGGTGGTCTATGTATTGACTCGGATGCTCTTGACCTGTTCAAACTCAAACAAGAATCAGTGTGGCGCCGCCTGAAACTGCGTCACTCCATCAACGACTTGATACAGGATATTGAGCGGAGTCTCCAAAACATTCAGCGGACAAAGGAGAGGTATCGCAGCATGGCCTCCTATTCAACCAATGCTGGCAACAACACATACCTTCATGTGAGAGTGGCTCCTTTGTTCATAGGTAACGTTGATACCGTGGGCATTGAGGAGCCTACAAATAAGCTGGTTTCCTGGGCCTTGGAACCGAAACAGAGGCTTGAGGTGATGTTTGTGGTGGGGATGGCTGGACTGGGGAAGACCACTCTTGTCCACAGCGTGTATGAGAGCGTGAAACAGAACTTTGATTGCCATATCTGGATCACTGCTTCAAAGTCCAAAACCAAACTCGATATCTTACGGACCTTGTTGGTGGAGAAATTCGGCTGTACAATCACACAGGGGGGCGATGTGGTTGCTCTGACGCATAAGCTGAGAAAATTTCTCCACAACAAACGGTATGTCATAGTTCTTGATGACTTATGGGTAAAAGATGTTTGGGAGTCCATTAGACTTGCCTTGCCAAATGGTAAGGACAGTAGAATAATTATCACTACAAGGAGAGGCGATATAGCTAATTCTTGGAGAGATGATGATTCTGTTGATATCCACATGCTTCAGCCACTGTCACCGGAAAGGGCTGAGAAACTCTTCTATAAGAAAGCTTTCTCAAGAAATGGCAGATGTCCTTCAGGCTTGGAGGAAGTCTCGAAATCCATCTTACAGAAATGTGATGGATTACCACTTGGGATTATTGAAATCGGTAGACTTTTATCCATCAAGGCTCCAACTAAAAATGAGTGGAAAATATTACATGATAGCCTTGAGTCTGAATTGAGAGGCAGTGGTGGCCTTTCAAATATTACGAAAGTGCTGTCTGCAAGTTATAATGATTTACCTTTCCATCTCAAGTATTGTTTCTTGTACATGAGCATCTTTCCTGAGACTAGCCCAGTTAAGCGAAGAAGGCTAATTCGGCTATGGATAGCTGAAGGGTTTGTAATAGAGAAAGGAGGCAAGACATCTGAAGAGGTTGGGGAAGAGTATCTGAATGAGCTGATTGACAGGAGTCTGATAAAGGTAAATGAAATGGATTTTGAAGGAAGGCCAAAAAGTGTGGGAGTTCATAGTCTGATGCTGAAGATGATTCTCTCAGTCTCACGAGAGGAGAACTTTTGTTCTGTTTGTACAGGATCAGAAAGGAACTTGAGTGAGAAAACCCGGCGCCTATCTATTCAGAAGGAAGATTTTGATGTGTCTCAGGACTTACCCTGTGTTCGAACCTTCTTCAGTTTCGGTATAGGCAAAGTAAAGATTGGTTCCAACTTCAAACTATTGAAGGTCTTGGACATACAGGGCACTCCTTTGGAAGAATTTCCGGGTGTAATTAAAGATCTTCTGCTCTTGAGGTACTTGAGTTTGAGGAATACAAATATAAGGAGCATTCCAGGGACCCTGGGTGACCTTCATCACCTTGAGACCTTGGATCTTAAGCAGACTCTGGTAACAAAAGTACCCAAAGCAGTCCTACAACTTGAGAAACTTCGCCATTTGCTGGTTTATCGCACCAAAGAGGATCGGCGCATTGAAGAACCTACAAAAGCTGTCATTTGTAAAGGTGAGTGGGCAGCACAGAATGAGTCGGGAGCACAGAATGATACAAGGGCTCGACAATCTTACGCAGTTGAGGAAGCTGGGCATTGTAGAACTAGCAAAAGAACGTGGGGCGAGCTTGTGCCTCTCAATTGA 3651 44.07 MPEKFVTQLKKKGGELRHLLHQKEKNVAEKAIQMAPILDSPKNVVGRATIFLQSMNVSPHVLNFCSNSSNGTSKTNNLFMRNQKIEYFLGGFLGTDHTHTRNLHQASCILSEYFLGGFKSACGHSIRLINCLEEAPPGDYHLSTHRNSKTFLWMADGAVSFLLQNLEAFATREWNLQEHIRNGVHNLKRELRSIEALMRDADAKKEHDHQFKVWIQEVRTEAYAIEDVLDLFRLHRDQESVMFVVGMAGLGKTTLARSVYEMVKEHFDCHAWIIASKSKTKPETLRSLLEHLGCSTEGDDDSIDIHKAWRKSPNPSYRNVMDYHLGLLKSVSCCGVSVKSYPKQSYNLINFATCWFMPTIWEIGAMKNLQKLSFVKAKRHNRMIQELKNLTKLRKLGIVELAKEDGNSLCHSIEKMPDLLSLDVTSLSKGEPLELDAMTNPPRLLQRLYLKGHLQRFPKWVSSLHDLVRIRLKWSLLSQDNPIEALQDLPNLMELQLLDAYTGTQLDFNSGKFQKLKILDLEQLKQLRFIIMEDDTLPCLQKLIIRQCNELEHVPVGIDGLHHLNELHLCDMPEKFVALLKKRGGELRHLLHRILRILSYQQGQLEGGLCIDSDALDLFKLKQESVWRRLKLRHSINDLIQDIERSLQNIQRTKERYRSMASYSTNAGNNTYLHVRVAPLFIGNVDTVGIEEPTNKLVSWALEPKQRLEVMFVVGMAGLGKTTLVHSVYESVKQNFDCHIWITASKSKTKLDILRTLLVEKFGCTITQGGDVVALTHKLRKFLHNKRYVIVLDDLWVKDVWESIRLALPNGKDSRIIITTRRGDIANSWRDDDSVDIHMLQPLSPERAEKLFYKKAFSRNGRCPSGLEEVSKSILQKCDGLPLGIIEIGRLLSIKAPTKNEWKILHDSLESELRGSGGLSNITKVLSASYNDLPFHLKYCFLYMSIFPETSPVKRRRLIRLWIAEGFVIEKGGKTSEEVGEEYLNELIDRSLIKVNEMDFEGRPKSVGVHSLMLKMILSVSREENFCSVCTGSERNLSEKTRRLSIQKEDFDVSQDLPCVRTFFSFGIGKVKIGSNFKLLKVLDIQGTPLEEFPGVIKDLLLLRYLSLRNTNIRSIPGTLGDLHHLETLDLKQTLVTKVPKAVLQLEKLRHLLVYRTKEDRRIEEPTKAVICKGEWAAQNESGAQNDTRARQSYAVEEAGHCRTSKRTWGELVPLN* 1217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 867582 888643 + Vvi1g86 Vvi1g86 769286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g86 1216 Pfam Rx N-terminal domain 158 240 IPR041118 -
Vvi1g86 1216 Gene3D - 843 929 IPR042197 -
Vvi1g86 1216 CDD RX-CC_like 155 235 IPR038005 -
Vvi1g86 1216 SUPERFAMILY L domain-like 1000 1156 - -
Vvi1g86 1216 PANTHER - 177 291 - -
Vvi1g86 1216 PANTHER - 614 1159 - -
Vvi1g86 1216 PANTHER - 360 578 - -
Vvi1g86 1216 SUPERFAMILY L domain-like 351 576 - -
Vvi1g86 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 679 943 IPR027417 -
Vvi1g86 1216 Gene3D - 157 265 - -
Vvi1g86 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 300 IPR027417 -
Vvi1g86 1216 Coils Coil 184 204 - -
Vvi1g86 1216 Coils Coil 636 660 - -
Vvi1g86 1216 Pfam NB-ARC domain 693 931 IPR002182 GO:0043531
Vvi1g86 1216 Pfam NB-ARC domain 236 301 IPR002182 GO:0043531
Vvi1g86 1216 Gene3D - 930 1019 IPR036388 -
Vvi1g86 1216 Gene3D Ribonuclease Inhibitor 1071 1174 IPR032675 -
Vvi1g86 1216 Gene3D Ribonuclease Inhibitor 331 583 IPR032675 -
Vvi1g86 1216 PRINTS Disease resistance protein signature 710 725 - -
Vvi1g86 1216 PRINTS Disease resistance protein signature 782 796 - -
Vvi1g86 1216 PRINTS Disease resistance protein signature 878 892 - -
Vvi1g86 1216 PRINTS Disease resistance protein signature 1121 1137 - -
Vvi1g86 1216 PANTHER DISEASE RESISTANCE PROTEIN RP 177 291 IPR044974 GO:0006952
Vvi1g86 1216 PANTHER DISEASE RESISTANCE PROTEIN RP 360 578 IPR044974 GO:0006952
Vvi1g86 1216 PANTHER DISEASE RESISTANCE PROTEIN RP 614 1159 IPR044974 GO:0006952
Vvi1g86 1216 Gene3D - 680 837 IPR027417 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g86 K13457 - vvi:100261136 1040.02