Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g860 ATGCATCACCTGCACCTGCTTTCTTCCTCATTCACCATCCAAAACCCTAGATTATGCCCTAATCACTCCCTTTCCTCGCTCCACTCCTCCTCACCCTTGAGCTTCACTTCACGAACTCCTCTTCTGCTTTCCACAACCAGGCACTTCCGTAAAAAGCGCTCATTGCAATGTCGCCAGTCGGATTACTTTCAACAGCAGAACATCACTCGCAGACAACCTCCAAATGACTCTTCTTTTGGAGGAGCTTTGCAGCCTAGGGTTTTTGTTGGTCATTCGATATACAAAGGGAAAGCTGCTCTTACGGTAGAGCCCAAAGCCCCGGAGTTTACGCCTTTAGATTCAGGGGCATTTAAAGTGTCCAAAGAAGGTTTTGTGCTGCTCCAGTTTGCTCCTGCTGCAGGTGTTCGACAATATGATTGGGGCAGAAAGCAGGTGTTCTCATTATCTGTGACTGAAATTGGAAGTCTTATTAGCCTTGGTGCAAGAGAGTCATGCGAATTTTTTCATGATCCTTTTAAAGGAAGAAGTGAGGAAGGTAAGGTCCGGAAGGTGTTGAAGGTAGAGCCGCTCCCAGATGGCTCTGGTCATTTCTTCAATCTCAGTGTTCAAAACAAGCTTTTGAATATGGATGAGAACATTTATATCCCTGTCACCAGAGCAGAATTTGCTGTGCTCATCTCAGCTTTTAATTTCATTGTGCCATATCTTTTAGGCTGGCATGCCTATGCGAACTCCATCAAGCCAGATGATACAAGTCGTGTGAATAATGCTAATCCGAGATCTGGGGACTTTGAATGGAGCAGATAG 807 45.48 MHHLHLLSSSFTIQNPRLCPNHSLSSLHSSSPLSFTSRTPLLLSTTRHFRKKRSLQCRQSDYFQQQNITRRQPPNDSSFGGALQPRVFVGHSIYKGKAALTVEPKAPEFTPLDSGAFKVSKEGFVLLQFAPAAGVRQYDWGRKQVFSLSVTEIGSLISLGARESCEFFHDPFKGRSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLLNMDENIYIPVTRAEFAVLISAFNFIVPYLLGWHAYANSIKPDDTSRVNNANPRSGDFEWSR* 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10929346 10935415 + Vvi1g860 Vvi1g860 770060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g860 268 Pfam Whirly transcription factor 93 227 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vvi1g860 268 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 30 268 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vvi1g860 268 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 30 268 - -
Vvi1g860 268 SUPERFAMILY ssDNA-binding transcriptional regulator domain 85 263 IPR009044 GO:0003677|GO:0006355
Vvi1g860 268 Gene3D Transcriptional Coactivator Pc4; Chain A 79 251 IPR009044 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g860 - - - vvi:100253653 513.457
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g860 . . . Bda11g01231 Bpe13g01428 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0609 Cone9ag0613 . . . . . . . Bda11g01231 . . . Bma06g00662 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi1g860 . 13 269 Whirly Transcription Factor Family AT1G14410 65.6 5.4e-93 337.8
Vvi18g1756 . 57 232 Whirly Transcription Factor Family AT1G71260 59.8 2.1e-56 216.1
Vvi1g860 . 21 269 Whirly Transcription Factor Family AT2G02740 65.7 5.1e-91 331.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007539 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14539 PF08536 Whirly 1.10E-61 CL0609 Vvi TF