Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g860 ATGCATCACCTGCACCTGCTTTCTTCCTCATTCACCATCCAAAACCCTAGATTATGCCCTAATCACTCCCTTTCCTCGCTCCACTCCTCCTCACCCTTGAGCTTCACTTCACGAACTCCTCTTCTGCTTTCCACAACCAGGCACTTCCGTAAAAAGCGCTCATTGCAATGTCGCCAGTCGGATTACTTTCAACAGCAGAACATCACTCGCAGACAACCTCCAAATGACTCTTCTTTTGGAGGAGCTTTGCAGCCTAGGGTTTTTGTTGGTCATTCGATATACAAAGGGAAAGCTGCTCTTACGGTAGAGCCCAAAGCCCCGGAGTTTACGCCTTTAGATTCAGGGGCATTTAAAGTGTCCAAAGAAGGTTTTGTGCTGCTCCAGTTTGCTCCTGCTGCAGGTGTTCGACAATATGATTGGGGCAGAAAGCAGGTGTTCTCATTATCTGTGACTGAAATTGGAAGTCTTATTAGCCTTGGTGCAAGAGAGTCATGCGAATTTTTTCATGATCCTTTTAAAGGAAGAAGTGAGGAAGGTAAGGTCCGGAAGGTGTTGAAGGTAGAGCCGCTCCCAGATGGCTCTGGTCATTTCTTCAATCTCAGTGTTCAAAACAAGCTTTTGAATATGGATGAGAACATTTATATCCCTGTCACCAGAGCAGAATTTGCTGTGCTCATCTCAGCTTTTAATTTCATTGTGCCATATCTTTTAGGCTGGCATGCCTATGCGAACTCCATCAAGCCAGATGATACAAGTCGTGTGAATAATGCTAATCCGAGATCTGGGGACTTTGAATGGAGCAGATAG 807 45.48 MHHLHLLSSSFTIQNPRLCPNHSLSSLHSSSPLSFTSRTPLLLSTTRHFRKKRSLQCRQSDYFQQQNITRRQPPNDSSFGGALQPRVFVGHSIYKGKAALTVEPKAPEFTPLDSGAFKVSKEGFVLLQFAPAAGVRQYDWGRKQVFSLSVTEIGSLISLGARESCEFFHDPFKGRSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLLNMDENIYIPVTRAEFAVLISAFNFIVPYLLGWHAYANSIKPDDTSRVNNANPRSGDFEWSR* 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10929346 10935415 + Vvi1g860 Vvi1g860 770060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g860 268 Pfam Whirly transcription factor 93 227 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vvi1g860 268 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 30 268 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vvi1g860 268 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 30 268 - -
Vvi1g860 268 SUPERFAMILY ssDNA-binding transcriptional regulator domain 85 263 IPR009044 GO:0003677|GO:0006355
Vvi1g860 268 Gene3D Transcriptional Coactivator Pc4; Chain A 79 251 IPR009044 GO:0003677|GO:0006355
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14539 PF08536 Whirly 1.10E-61 CL0609 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g860 - - vvi:100253653 513.457